View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19139_high_3 (Length: 551)
Name: NF19139_high_3
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 10599582 - 10599053
Alignment:
| Q |
1 |
attgcggcaatcggtgggactatattgctgtttaccaatctctgcctgaaaaacaatttaaggttggaggtcagtggaagaggctggtcgaagctcgaag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10599582 |
attgctgcaatcggtgggactatattgctgtttaccaatctctgcctgaaaaacaatttaaggttggaggtcagtggaagaggctggtcgaagctcgaag |
10599483 |
T |
|
| Q |
101 |
agttaagcatggtgcatacatgattgttgttgctccaacggctggaaacaacaacactctttacctaagtcttcaacgtctttgaatagtttgatgtgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10599482 |
agttaagcatggtgcatacatgattgttggtgctccaacggctggaaacaacaacactctttacctaagtcttcaacgtctttgaatagtttgatgtgta |
10599383 |
T |
|
| Q |
201 |
actgaggctactgagactggaatttcaagtgctttctatcaaattaattttagtattttagtccaagtgaaatatgtaatgtcattgctataagttctat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10599382 |
actgaggctactgagactggaatttcaagtgctttctatcaaattaattttagtattttagtccaagtgaaatatgtaatgtcattgctataagttctat |
10599283 |
T |
|
| Q |
301 |
aatagttttaatatttctatgttagttttaagttttttgaacttttaatcaaacttatttatcagacttggcaagtagtgtgaatgagattttttgatta |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10599282 |
aatagttttaatatttttatgttagttttaagttttttgaacttttaatcaaacttatttatcagacttggcaagtagtgtgaatgagatttttttatta |
10599183 |
T |
|
| Q |
401 |
tgtttcatgaaatatccaccttgaagtataattatattgtcgannnnnnnnngagttagtgcttcttcgttattgttcatttcattgggtgattttgaaa |
500 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10599182 |
tgtttcatgaaatatccaccttaaagtataat--tattgtcga-ttttttttgagttagtgcttcttcgttattgttcatttcattgggtgattttgaaa |
10599086 |
T |
|
| Q |
501 |
gcaaaattaaatcaacctaaattatgaaaccta |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10599085 |
gcaaaattaaatcaacctaaattatgaaaccta |
10599053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 6254681 - 6255197
Alignment:
| Q |
1 |
attgcggcaatcggtgggactatattgctgtttaccaatctctgcctgaaaaacaatttaaggttggaggtcagtggaagaggctggtcgaagctcgaag |
100 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6254681 |
attgcggcaatcggtgagactgtattgatgtttactaatctctgcctgaaaaacaatttaaggttggaggtcagtggaagaggctggtcgaaggtcgaag |
6254780 |
T |
|
| Q |
101 |
agttaagcatggtgcatacatgattgttgttgctccaacggctggaaacaacaacactctttacctaagtcttcaacgtctttgaatagtttgatgtgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
6254781 |
agttaagcatggtgcatacatgattgttcgtgctccaacggctggaaacaacatcactctttacctaagtcttaaatgtctttgaattgtttgatgtgt- |
6254879 |
T |
|
| Q |
201 |
actgaggctactgagactggaatttcaagtgctttctatcaaattaattttagtattttagtccaagtgaaatatgtaatgtcattgctataagttctat |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6254880 |
------------gagattggaatttcaagtgctttctatcaaattaatcttagtattttagtccaagtgaaatatgtaatgtcattgctataagttctat |
6254967 |
T |
|
| Q |
301 |
aatagttttaatatttctatgttagtttt-aagttttttgaacttttaatcaaacttatttatcagacttggcaagtagtgtgaatgagattttttgatt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
6254968 |
aatagttttaatatttctatgttagttttaaagttttttgaacttttaatcaagcttatgtatcagacttggcaagtagtctgaatgagatattttgatt |
6255067 |
T |
|
| Q |
400 |
atgtttcatgaaatatccaccttgaagtataattatattgtcgannnnnnnnngagttagtgcttcttcgttattgttcatttcattgggtgattttgaa |
499 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6255068 |
atgtttcatgaaatatccaccttaaagtataat--tattgtcga--cttttttgcgttagtgcttcttcgttattgttcatttcattgggtgattttgaa |
6255163 |
T |
|
| Q |
500 |
agcaaaattaaatcaacctaaattatgaaaccta |
533 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |
|
|
| T |
6255164 |
agcaaaattaagtcaacctaaactatgaaaccta |
6255197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University