View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_high_6 (Length: 483)
Name: NF19139_high_6
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 10945910 - 10946066
Alignment:
| Q |
2 |
aaaatttatcaaagctaaagtcgacgtatcagtactatattttaatatgtaggttcacaagatattcagttttaacatgtatatcacaactctatacatt |
101 |
Q |
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||||||||||||| |||||| ||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10945910 |
aaaatttatcaaaactaaagatgacatatcagtactatattttaat--gtaggttaacaagatattcaactttaacatgtatatcacaactctatacatt |
10946007 |
T |
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| Q |
102 |
ttgaataaa-ttctacatcatttttcaataactcatgcttgcatccattttcttaggcat |
160 |
Q |
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||||||||| || || |||| ||||||| |||||||||||||||| ||||| |||||||| |
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| T |
10946008 |
ttgaataaatttttatatcacttttcaacaactcatgcttgcatctatttt-ttaggcat |
10946066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 10940041 - 10940197
Alignment:
| Q |
2 |
aaaatttatcaaagctaaagtcgacgtatcagtactatattttaatatgtaggttcacaagatattcagttttaacatgtatatcacaactctatacatt |
101 |
Q |
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||||||||||||| |||||| ||| ||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10940041 |
aaaatttatcaaaactaaagatgacatatcaatactatattttaat--gtaggttaacaagatattcaactttaacatgtatatcacaactctatacatt |
10940138 |
T |
|
| Q |
102 |
ttgaataaa-ttctacatcatttttcaataactcatgcttgcatccattttcttaggcat |
160 |
Q |
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||||||||| || || |||| ||||||| ||||||||||||| || ||||| |||||||| |
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| T |
10940139 |
ttgaataaatttttatatcacttttcaacaactcatgcttgcttctatttt-ttaggcat |
10940197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 49389523 - 49389679
Alignment:
| Q |
2 |
aaaatttatcaaagctaaagtcgacgtatcagtactatattttaatatgtaggttcacaagatattcagttttaacatgtatatcacaactctatacatt |
101 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49389523 |
aaaatttatcaaaactaaagatgacatatcagtactatattttaat--gtaggttaacaagatattcaactttaacatgtatatcacaactctatacatt |
49389620 |
T |
|
| Q |
102 |
ttgaataaa-ttctacatcatttttcaataactcatgcttgcatccattttcttaggcat |
160 |
Q |
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|
||||||||| || || |||| ||||||| ||||||||||||| || ||||| |||||||| |
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|
| T |
49389621 |
ttgaataaatttttatatcacttttcaacaactcatgcttgcttctatttt-ttaggcat |
49389679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 24043570 - 24043726
Alignment:
| Q |
2 |
aaaatttatcaaagctaaagtcgacgtatcagtactatattttaatatgtaggttcacaagatattcagttttaacatgtatatcacaactctatacatt |
101 |
Q |
| |
|
||||||||||||| |||||| ||| ||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24043570 |
aaaatttatcaaaactaaagatgacatatcaatactatattttaat--gtaggttaacaagatattcaactttaacatgtatatcacaactctatacatt |
24043667 |
T |
|
| Q |
102 |
ttgaataaa-ttctacatcatttttcaataactcatgcttgcatccattttcttaggcat |
160 |
Q |
| |
|
||||||||| || || |||| ||||||| ||||||||||||| || ||||| |||||||| |
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|
| T |
24043668 |
ttgaataaatttttatatcacttttcaacaactcatgcttgcttctatttt-ttaggcat |
24043726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 13817270 - 13817122
Alignment:
| Q |
2 |
aaaatttatcaaagctaaagtcgacgtatcagtactatattttaatatgtaggttcacaagatattcagttttaacatgtatatcacaactctatacatt |
101 |
Q |
| |
|
||||||||||||| |||||| ||| ||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
13817270 |
aaaatttatcaaaactaaagatgacatatcattactatattttaat--gtaggttaacaagatattcaactttaacatgtatattacaactctatacatt |
13817173 |
T |
|
| Q |
102 |
ttgaataaa-ttctacatcatttttcaataactcatgcttgcatccatttt |
151 |
Q |
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||||||||| || || |||| ||||||| ||||||||||||| || ||||| |
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| T |
13817172 |
ttgaataaatttttatatcacttttcaacaactcatgcttgcttctatttt |
13817122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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