View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_high_8 (Length: 438)
Name: NF19139_high_8
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Original strand, 24689244 - 24689650
Alignment:
| Q |
14 |
gaacctgtgatttggggaagaagatgaactgaatagatctacgaattgaacacaatacattgagaactaagttatatagctcttgttttcattacagnnn |
113 |
Q |
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| T |
24689244 |
gaacctgtgatttggggaagaagatgaactgaatagatctacgaattgaacacaatacattgagaactaagttatatagctcttgttttcattacagaaa |
24689343 |
T |
|
| Q |
114 |
nnnnnnnnngaagggaaaggaaaggctaacaatatgctatccgactaactaacggtattcagactaactaaactagttatcctaattatcctcatatggg |
213 |
Q |
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| T |
24689344 |
aacaaaaaagaagggaaaggaaaggctaacaatatgctatccgactaactaacggtattcagactaactaaactagttatcctaattatcctcatatggg |
24689443 |
T |
|
| Q |
214 |
ttaatgacagatcaagagtataaagtttgaagtccattgttgaaaggttgaagatcaggatagaattggtgaacgtgtatgctagctgctgagctgtaga |
313 |
Q |
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| T |
24689444 |
ttaatgacagatcaagagtataaagtttgaagtccattgttgaaaggttgaagatcaggatagaattggtgaacgtgtatgctagctgctgagctgtaga |
24689543 |
T |
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| Q |
314 |
aattggcagaaggtaaaatagacgttgatggagtttttcccgaactaggagacagttgaggtcaatatgttttgcacgctcatgaaatgatgaattggtg |
413 |
Q |
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| T |
24689544 |
aattggcagaaggtaaaatagacgttgatggagtttttcccgaactaggagacagttgaggtcaatattttttgcacgctcatgaaatgatgaattggtg |
24689643 |
T |
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| Q |
414 |
gcaatgt |
420 |
Q |
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| T |
24689644 |
gcaatgt |
24689650 |
T |
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