View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_high_9 (Length: 435)
Name: NF19139_high_9
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 36695509 - 36695082
Alignment:
| Q |
1 |
aaggtttaaatagaggtttagcaacatttttggcaggtgttcttggacttggatcttattacatggttcactcaatttcaagaggaaatacaacaattga |
100 |
Q |
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| T |
36695509 |
aaggtttaaatagaggtttagcaacatttttggcaggtgttcttggacttggatcttattacatggttcattcaatttcaagaggaaatacaacaattga |
36695410 |
T |
|
| Q |
101 |
acctatacttcttggaatcataatatttctagcaagtaatatttacttctctgattgtatatttcataatttcaccagtaagaactatcaaaaacaatac |
200 |
Q |
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| T |
36695409 |
acctatacttcttggaatcataatatttctagcaagtaatatttacttctctaattgtatatttcataatttcaccagtaagaactatcaaaaacaatac |
36695310 |
T |
|
| Q |
201 |
taaccaatgcatgnnnnnnnaatcatttcagctgcaggggctacatatattcgatttatacctctaatgaaggcaagatatgattatggtttgctagtgt |
300 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36695309 |
taaccaacgcatttttttttaatcatttcagctgcaggggctacatatattcgatttatacctctaatgaaggcaagatatgattatggtttgctagtgt |
36695210 |
T |
|
| Q |
301 |
ttatcttgacattttgtttggtatctgtatcaagttatagagaccatgagataattgatactgcacaagatagggtaacaacaattctagttggtggatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36695209 |
ttatcttgacattttgtttggtatctgtatcaagttatagagaccatgagataattgatactgcacaagatagggtaacaacaattctagttggtggatt |
36695110 |
T |
|
| Q |
401 |
aatttctgtgttggttaacatattcttg |
428 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
36695109 |
aatttctgtgttggttaacattttcttg |
36695082 |
T |
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