View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19139_low_1 (Length: 989)
Name: NF19139_low_1
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 904; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 904; E-Value: 0
Query Start/End: Original strand, 16 - 975
Target Start/End: Original strand, 46808350 - 46809309
Alignment:
| Q |
16 |
cagagacctacacgcgaaggtcgttgggaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaacgagagaaagaggagcgac |
115 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46808350 |
cagagacctacacgcgaaggtcgttggaaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaacgtgagaaagaggagcgac |
46808449 |
T |
|
| Q |
116 |
aaaaacatcaacctggacgtgaaagagagaaatgggagaaacgagaggatgaagagtggagaggtcgccaacgtcatgaagatccagatgagagggcgag |
215 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46808450 |
aaaaacatcaacctggacgtgaaagggagaaatgggagaaacgagaagatgaagagtggagaggtcgccaacgtcatgaagatccagatgagagggcgag |
46808549 |
T |
|
| Q |
216 |
gttgaggcatagagaggagagaaggaaaaaggaagaagaacatcagaaaggggatagaccttcacgcacaccttcacgccgtgagcgtggagaggaggaa |
315 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46808550 |
gttgaggcatagagaggagagaaggcaaaaggaagaagaacatcagaaaggggatagaccttcacgcacaccttcacgtcgtgagcgtggagaggaggaa |
46808649 |
T |
|
| Q |
316 |
gaaggttcttctgagtcagaaggaagaagaaacccttttttgttcaggtctaacaggttccaaacactctttgagaacgaaaatggtcacattcgtctca |
415 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46808650 |
gaaggttcttcagagtcagaaggaagaagaaacccttttttgttcaggtctaacaggttccaaacactctttgagaacgaaaatggtcacattcgtctca |
46808749 |
T |
|
| Q |
416 |
tccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaactaccgtcttttggagtacagagcaaaaccccacaccatcttcctcccccacca |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
46808750 |
tccaaaggtttgacaaacgttcaaacttatttcaaaatttaaaaaactaccgtcttttggagtacagagccaaaccccacaccatcttcctcccccacca |
46808849 |
T |
|
| Q |
516 |
cactgatgccgacttcatccttgtagtccttagtggtacgtaattattttattatgttacattactataacatcttgcattgttggaagaatttgagttc |
615 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46808850 |
cactgatgccgactttatccttgtagtcctcagtggtgcgtaattattttattatgttatattactataacatcttgcattgttggaagaatttgagttc |
46808949 |
T |
|
| Q |
616 |
aacatccattaatagtagtttttcttcttcattttacatacataactaatttgtttgttattatatgtgtatgcagggaaagccatacttactgtgttaa |
715 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46808950 |
aacatccattaatggtagtttttcttcttcattttacatacataactaatttgtttgttattatatgtgtatgcagggaaagccatacttactgtgttaa |
46809049 |
T |
|
| Q |
716 |
attccaacaatagaaactcgtttaaccttgagcaaggtgatactattaaactccctgcgggctcgactgcttatctagttaaccaagacaatgatgagga |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46809050 |
attccaacaatagaaactcgtttaaccttgagcaaggtgatactattaaactccctgcgggctcgactgcttatctagttaaccaagacaatgatgagga |
46809149 |
T |
|
| Q |
816 |
tcttagggtagtagatctcgtcatacctgttaataggcctggtaaatttcaggtaatatatataatgctaaacttttcctcacatgcaccacatatataa |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46809150 |
tcttagggtagtagatctcgtcatacctgttaataggcctggtaaatttcaggtaatatatataatgctaaacttttcctcacatgcaccacatatataa |
46809249 |
T |
|
| Q |
916 |
atagtttacaccaatactagtttttctatttctaacagttgatcattatccttcttcttg |
975 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46809250 |
atagtttacaccaatactagtttttctatttctaacagttgatcattatccttcttcttg |
46809309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 46808118 - 46808196
Alignment:
| Q |
18 |
gagacctacacgcgaaggtcgttgggaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaa |
96 |
Q |
| |
|
||||||| |||| | ||||||| |||||||||||||||||||||| ||||||||||||||||| || || ||||||| |
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|
| T |
46808118 |
gagacctccacgtggaggtcgtcaagaaggccaagaacaacgccctggacaatggagaccttcacatgaaagggaggaa |
46808196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 2e-33; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 364 - 565
Target Start/End: Original strand, 30285199 - 30285400
Alignment:
| Q |
364 |
tctaacaggttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaact |
463 |
Q |
| |
|
||||||||||| ||||| || |||||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| | |||||| |
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|
| T |
30285199 |
tctaacaggtttcaaactctttttgagaatgaaaatggtcacattcgtctcctccaaaggtttgacaaacgttccaaaatatttgaaaatcttcaaaact |
30285298 |
T |
|
| Q |
464 |
accgtcttttggagtacagagcaaaaccccacaccatcttcctcccccaccacactgatgccgacttcatccttgtagtccttagtggtacgtaattatt |
563 |
Q |
| |
|
|||| || ||||| || | ||||| |||||| |||| || || || |||| |||||| |||||||| ||||||||| ||||||||| |||||||| |
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|
| T |
30285299 |
accgactcttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgacttcattcttgtagtcgttagtggtaattaattatt |
30285398 |
T |
|
| Q |
564 |
tt |
565 |
Q |
| |
|
|| |
|
|
| T |
30285399 |
tt |
30285400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 364 - 553
Target Start/End: Original strand, 30313706 - 30313895
Alignment:
| Q |
364 |
tctaacaggttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaact |
463 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||| ||| | |||||| |
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|
| T |
30313706 |
tctaacaggtttcaaactctttttgagaacgaaaatggtcacattcggcttctccaaaggtttgacaaacgttccaaaatatttgagaatctccaaaact |
30313805 |
T |
|
| Q |
464 |
accgtcttttggagtacagagcaaaaccccacaccatcttcctcccccaccacactgatgccgacttcatccttgtagtccttagtggta |
553 |
Q |
| |
|
| || |||||||| || | ||||| |||||| |||| || || || |||| |||||| |||||||| |||| |||||||||||||| |
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|
| T |
30313806 |
atcgacttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgacttcattcttgcagtccttagtggta |
30313895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 373 - 553
Target Start/End: Original strand, 30297665 - 30297845
Alignment:
| Q |
373 |
ttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaactaccgtcttt |
472 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||| | ||||||| || |||| |
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|
| T |
30297665 |
ttccaaactctttttgagaacgaaaatggtcacattcgtctcctccaaaggtttgacaaacgttccaaaatatttgagaatcttcaaaactatcgccttt |
30297764 |
T |
|
| Q |
473 |
tggagtacagagcaaaaccccacaccatcttcctcccccaccacactgatgccgacttcatccttgtagtccttagtggta |
553 |
Q |
| |
|
|||| || | ||||| ||||| |||| || || || |||| |||||| ||||||||||||| ||| |||||||||| |
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|
| T |
30297765 |
tggaatatcactccaaacctcacactctctttcttccacaacacaatgatgctgacttcatccttgcagtgcttagtggta |
30297845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 373 - 553
Target Start/End: Original strand, 30302851 - 30303031
Alignment:
| Q |
373 |
ttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaactaccgtcttt |
472 |
Q |
| |
|
|||||||| || ||||| || ||||||||||||||||||||| | |||||||| |||||||||||||| ||||||| ||| | ||||||| || |||| |
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|
| T |
30302851 |
ttccaaactctttttgaaaatgaaaatggtcacattcgtctccttcaaaggttcgacaaacgttcaaaaatatttgagaatctccaaaactatcgccttt |
30302950 |
T |
|
| Q |
473 |
tggagtacagagcaaaaccccacaccatcttcctcccccaccacactgatgccgacttcatccttgtagtccttagtggta |
553 |
Q |
| |
|
|||| ||| | ||||| ||||| |||| || || || |||| |||||| ||||||||||||| |||||||||||||| |
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|
| T |
30302951 |
tggaataccactccaaacctcacactctctttcttccacaacacaatgatgctgacttcatccttgcagtccttagtggta |
30303031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 373 - 553
Target Start/End: Original strand, 30290165 - 30290345
Alignment:
| Q |
373 |
ttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaactaccgtcttt |
472 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||||| | ||||| || |||||||| || || ||||||||||| | ||||||||||||||| |
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|
| T |
30290165 |
ttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaagattcgacaaacgctccaaaatatttgaaaatctccaaaactaccgtcttt |
30290264 |
T |
|
| Q |
473 |
tggagtacagagcaaaaccccacaccatcttcctcccccaccacactgatgccgacttcatccttgtagtccttagtggta |
553 |
Q |
| |
|
|||| || | ||||| |||||| |||| || || || |||| |||||| ||||| ||||||| ||| |||||||||| |
|
|
| T |
30290265 |
tggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgactttatccttgcagtgcttagtggta |
30290345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 687 - 874
Target Start/End: Original strand, 30297983 - 30298170
Alignment:
| Q |
687 |
tgcagggaaagccatacttactgtgttaaattccaacaatagaaactcgtttaaccttgagcaaggtgatactattaaactccctgcgggctcgactgct |
786 |
Q |
| |
|
|||||||||||||||||| || ||||| || | |||| |||||||| || |||||||| | ||||||||||| ||||||||||| ||| | |||| |
|
|
| T |
30297983 |
tgcagggaaagccatactcaccgtgttgaacccagacaacagaaactccttcaaccttgaacgcggtgatactatcaaactccctgccggcagcattgct |
30298082 |
T |
|
| Q |
787 |
tatctagttaaccaagacaatgatgaggatcttagggtagtagatctcgtcatacctgttaataggcctggtaaatttcaggtaatat |
874 |
Q |
| |
|
||| | | ||||| ||| | ||||||||||||| ||| ||||||| | ||| || ||||| || || ||||||||||||||||||| |
|
|
| T |
30298083 |
tatttggctaaccgagatgacaatgaggatcttagagtattagatcttgccatccccgttaacagacccggtaaatttcaggtaatat |
30298170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 687 - 773
Target Start/End: Original strand, 30285514 - 30285600
Alignment:
| Q |
687 |
tgcagggaaagccatacttactgtgttaaattccaacaatagaaactcgtttaaccttgagcaaggtgatactattaaactccctgc |
773 |
Q |
| |
|
|||||||||||||||||| || ||||| || |||||||||||||||| || |||||||||| |||||||| || ||||||||||| |
|
|
| T |
30285514 |
tgcagggaaagccatactgacggtgttgaaccccaacaatagaaactccttcaaccttgagcgtggtgataccatcaaactccctgc |
30285600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 687 - 874
Target Start/End: Original strand, 30303167 - 30303354
Alignment:
| Q |
687 |
tgcagggaaagccatacttactgtgttaaattccaacaatagaaactcgtttaaccttgagcaaggtgatactattaaactccctgcgggctcgactgct |
786 |
Q |
| |
|
|||||||||||||||||| || ||||| || | |||||||||||||| || |||||||| | |||||||| || ||||||||||| ||| | |||| |
|
|
| T |
30303167 |
tgcagggaaagccatactcacggtgttgaacccaaacaatagaaactccttcaaccttgaacgtggtgataccatcaaactccctgccggcagcattgct |
30303266 |
T |
|
| Q |
787 |
tatctagttaaccaagacaatgatgaggatcttagggtagtagatctcgtcatacctgttaataggcctggtaaatttcaggtaatat |
874 |
Q |
| |
|
||| | | ||||| ||| | | |||| ||||| ||| ||||||| | ||| |||||||| || || ||| ||||||||||||||| |
|
|
| T |
30303267 |
tatttggctaaccgagatgacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatat |
30303354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 687 - 874
Target Start/End: Original strand, 30314036 - 30314223
Alignment:
| Q |
687 |
tgcagggaaagccatacttactgtgttaaattccaacaatagaaactcgtttaaccttgagcaaggtgatactattaaactccctgcgggctcgactgct |
786 |
Q |
| |
|
|||||||||||||||||| || ||||| || | |||||||||||||| || |||||||| | |||||||| || ||||||||||| ||| | |||| |
|
|
| T |
30314036 |
tgcagggaaagccatactcacggtgttgaacccaaacaatagaaactccttcaaccttgaacgtggtgataccatcaaactccctgctggcagcattgct |
30314135 |
T |
|
| Q |
787 |
tatctagttaaccaagacaatgatgaggatcttagggtagtagatctcgtcatacctgttaataggcctggtaaatttcaggtaatat |
874 |
Q |
| |
|
||| | | ||||| ||| | | |||| ||||| ||| ||||||| | ||| |||||||| || || ||| ||||||||||||||| |
|
|
| T |
30314136 |
tatttggctaaccgagatgacaaccaggaccttagagtattagatcttgccatccctgttaacagacccggtcaatttcaggtaatat |
30314223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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