View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_low_10 (Length: 409)
Name: NF19139_low_10
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 10201719 - 10202117
Alignment:
| Q |
1 |
ttcaagtatcgattattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcagaaggt |
100 |
Q |
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| T |
10201719 |
ttcaagtatcgattattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcagaaggt |
10201818 |
T |
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| Q |
101 |
tcttaggcatgcaccttgttctgtcggtgtaattatagaaagaggacttactacgtcatttggtttctcggaactaatagaatctgaaaccattcaaaat |
200 |
Q |
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| T |
10201819 |
tcttaggcatgcaccttgttctgtcggtgtaattatagaaagaggacttactacatcatttggtttctcggaactaatagaatctgaaaccattcaaaat |
10201918 |
T |
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| Q |
201 |
gttgcaacac-nnnnnnnggagggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgtcctcgaattaacttgacaatcattagat |
299 |
Q |
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| T |
10201919 |
gttgcaacacttttttttggagggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgccctcgaattaacttgacaatcattagat |
10202018 |
T |
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| Q |
300 |
ttttgttgtcgtctaaattagaaaatgaacaaattgataaaagtggagtacaatctaaggaaaaagagattttaatgtcgttgtctggggaagaaactg |
398 |
Q |
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| T |
10202019 |
ttttgttgtcgtctaaattagaaaatgaacaaattgataaaagtggagtacaatctaaggaaaaagagattttaatgtcgttgtccggggaagagactg |
10202117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 51740921 - 51741065
Alignment:
| Q |
1 |
ttcaagtatcgattattcttcttccctttcacaagcatcaacgaatcgatggaaaacttgaaagcggaaaagaaggtataaggattactaatcagaaggt |
100 |
Q |
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| T |
51740921 |
ttcaagtatcaattatccttcttccttttcacaagcatcaacgaattgatggtaaattagaaagtggaaaagaaggtataaggattactaatcaaaaggt |
51741020 |
T |
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| Q |
101 |
tcttaggcatgcaccttgttctgtcggtgtaattatagaaagagg |
145 |
Q |
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| T |
51741021 |
tcttagacacgcaccttgttcagtaggtgttattatcgaaagagg |
51741065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 51741139 - 51741230
Alignment:
| Q |
218 |
ggagggccggatgaccgcgaggctgttgcttggagcctacgcatttcaaaatgtcctcgaattaacttgacaatcattagatttttgttgtc |
309 |
Q |
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| T |
51741139 |
ggaggcccggacgatcgtgaggctatagcttggagcctaagaatttcaaaatgccctcgcattaatctgacaatcatcagattttttttgtc |
51741230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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