View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_low_12 (Length: 401)
Name: NF19139_low_12
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 34418431 - 34418814
Alignment:
| Q |
1 |
attactttccacacccctacattacccataaaactccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttccaaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418431 |
attactttccacacccctacattacccataaaactccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttccaaacc |
34418530 |
T |
|
| Q |
101 |
tatccaataacactgcggttatcgtgaatgctggcatctctgcaaccgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacgtttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418531 |
tatccaataacactgcggttatcgtgaatgctggcatctctgcgactgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacgtttaa |
34418630 |
T |
|
| Q |
201 |
gctaagaccataatacaccaccgaggctaagaaattaagagctatcgctagaaataacctaatacgtgtaactgggtagcgaatcacatcaataatggat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34418631 |
gctaagaccataatacaccaccgaggctaagaaattaagagctatcgctagaaataacctaatacgtgtaactgggtagcgaatcacatcaataatggat |
34418730 |
T |
|
| Q |
301 |
ccaacttgtgcatccttgttttccacgtagctaattaggttgtattcaagatcacttgttgannnnnnngaatttgatacctct |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34418731 |
ccaacttgtgcatccttgttttccacgtagctaattaggttgtattcaagatcacttgttgatttttttgaatttgatacctct |
34418814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 34430680 - 34431041
Alignment:
| Q |
1 |
attactttccacacccctacattacccataaaactccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttccaaacc |
100 |
Q |
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||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
34430680 |
attactttccacacccctacattactcatcaaactccccatcaaacaaaagaatccactaaaccacattgtccctattgtcaatggcttcctcccaaacc |
34430779 |
T |
|
| Q |
101 |
tatccaataacactgcggttatcgtgaatgctggcatctctgcaaccgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacgtttaa |
200 |
Q |
| |
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||||||| ||||| || ||||||| || || ||||| ||||| |||||||| || ||||| |||||||||||||||||||||| |||||||| ||||| |
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| T |
34430780 |
tatccaacaacaccgccgttatcgcaaacgccggcatttctgctaccgcattgaggagcacactcatgtagaggttggtttcgagatttgtaacatttaa |
34430879 |
T |
|
| Q |
201 |
gctaagaccataatacaccaccgaggctaagaaattaagagctatcgctagaaataacctaatacgtgtaactgggtagcgaatcacatcaataatggat |
300 |
Q |
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||||| ||| | ||||| || |||| ||||| |||| || |||||||||||||||||||||||||||||||| ||| ||||||||||| | ||||||| |
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| T |
34430880 |
gctaatcccaaagtacacaactgaggtcaagaagttaatagttatcgctagaaataacctaatacgtgtaactgagtaacgaatcacatctacaatggat |
34430979 |
T |
|
| Q |
301 |
ccaacttgtgcatccttgttttccacgtagctaattaggttgtattcaagatcacttgttga |
362 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34430980 |
ccaacttgtgcatccttattttccacgtagttaattaggttgtattcaagatcacttgttga |
34431041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 31613185 - 31612969
Alignment:
| Q |
5 |
ctttccacacccctacattacccataaaactccccagcaaacaaaagaatccactaaaccacattgtccctattgtcaatggtttccttccaaacctatc |
104 |
Q |
| |
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||||||||||||| ||| | ||| |||||||||| ||||||||||||||||| ||||| | |||||||||||| ||||| ||||| |||||| |||| |
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| T |
31613185 |
ctttccacacccccttatttctcatcaaactccccacaaaacaaaagaatccactgaaccataatgtccctattgttaatggcttcctcccaaacttatc |
31613086 |
T |
|
| Q |
105 |
caataacactgcggttatcgtgaatgctggcatctctgcaaccgcatttagaagcacgttcatgtagaggttggtttcgaggtttgtaacgtttaagcta |
204 |
Q |
| |
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||| || | ||| |||||| |||| ||||||||||| || || || || || | ||||| | ||| || || |||||||||||| ||||||| ||| |
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| T |
31613085 |
caacaagattgctgttatcatgaacgctggcatctccgccactgcgttgagtattacgttaaggtaaagatttgtttcgaggtttactacgtttaggctt |
31612986 |
T |
|
| Q |
205 |
agaccataatacaccac |
221 |
Q |
| |
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|||||||| |||||||| |
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|
| T |
31612985 |
agaccatagtacaccac |
31612969 |
T |
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