View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19139_low_15 (Length: 352)

Name: NF19139_low_15
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19139_low_15
NF19139_low_15
[»] chr2 (9 HSPs)
chr2 (205-352)||(8503766-8503917)
chr2 (79-173)||(8503947-8504041)
chr2 (10-79)||(8504434-8504503)
chr2 (209-339)||(7709753-7709885)
chr2 (213-275)||(6951771-6951833)
chr2 (26-83)||(28566603-28566660)
chr2 (285-339)||(864221-864274)
chr2 (209-277)||(5140011-5140079)
chr2 (213-277)||(42635379-42635443)
[»] chr3 (7 HSPs)
chr3 (203-339)||(54186964-54187105)
chr3 (203-338)||(29235653-29235793)
chr3 (285-339)||(48543264-48543319)
chr3 (223-338)||(13639408-13639528)
chr3 (209-332)||(38602820-38602948)
chr3 (52-117)||(21417666-21417731)
chr3 (225-274)||(52366587-52366636)
[»] chr1 (5 HSPs)
chr1 (209-339)||(19078916-19079051)
chr1 (209-339)||(19126804-19126939)
chr1 (209-339)||(24886042-24886177)
chr1 (209-338)||(29068084-29068218)
chr1 (42-148)||(15427489-15427600)
[»] chr8 (5 HSPs)
chr8 (209-338)||(33440545-33440679)
chr8 (223-338)||(28700559-28700679)
chr8 (39-87)||(38867578-38867626)
chr8 (51-109)||(40496039-40496097)
chr8 (223-272)||(31024175-31024224)
[»] chr7 (8 HSPs)
chr7 (211-339)||(17878685-17878818)
chr7 (209-333)||(47821990-47822119)
chr7 (285-338)||(43930080-43930134)
chr7 (223-274)||(557432-557483)
chr7 (295-338)||(22155941-22155984)
chr7 (295-338)||(22211856-22211899)
chr7 (209-274)||(3399027-3399092)
chr7 (209-254)||(36738552-36738597)
[»] chr4 (6 HSPs)
chr4 (209-277)||(43480314-43480382)
chr4 (221-276)||(51823131-51823186)
chr4 (285-339)||(31699600-31699655)
chr4 (285-335)||(37306413-37306464)
chr4 (223-277)||(37306461-37306515)
chr4 (209-254)||(30111861-30111906)
[»] chr6 (2 HSPs)
chr6 (285-339)||(32439481-32439536)
chr6 (212-277)||(7447610-7447675)
[»] scaffold0922 (1 HSPs)
scaffold0922 (223-279)||(735-791)
[»] chr5 (2 HSPs)
chr5 (213-277)||(17190654-17190718)
chr5 (299-339)||(17190612-17190652)


Alignment Details
Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 205 - 352
Target Start/End: Complemental strand, 8503917 - 8503766
Alignment:
Q  205 atttactctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggtat-catata---ttcacccaataaagag 300  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| || |||   ||||||||||||||||    
T  8503917 atttactctcctattggatgaaactcatgtggatctcaccactttatgtgagattcatttttaatgtgcggtatccacatagatttcacccaataaagag 8503818  T
Q  301 tgagtgttatagagagcgttagaaagagagtgttcatagactttttattgtt 352  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  8503817 tgagtgttatagagagggttagaaagagagtgttcatagactttttgttgtt 8503766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 8504041 - 8503947
Alignment:
Q  79 tttttctatgtaagttttattgttttgatgagaaatttgtagattttcaaaatgaatgaattttatgaagtattattttgaagagaaatgttagg 173  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  8504041 tttttctatttaagttttattgttttgatgataaatttgtagatttttaaaatgaatgaattttatgaagtattgttttgaagagaaatgttagg 8503947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 8504503 - 8504434
Alignment:
Q  10 attattctgttttgtttgtttggatgaaagaatttttggaggtaatataattttagatgataattcaaat 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  8504503 attattctgttttgtttgtttggatgaaagaatttttggaggtaatataattttagattgtaattcaaat 8504434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 7709885 - 7709753
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggtatc---atatattcacccaataaa-gagtgag 304  Q
    ||||||||||  | |||||||||||| |  |||||||||||||||| ||   ||||  ||||||||||| |   ||| |||||||||||||| |||||||    
T  7709885 actctcctatagggtgaaactcatgtgggactcaccactttatgtgggatctatttccaatgtgtggtacccacataaattcacccaataaaagagtgag 7709786  T
Q  305 tgttatagagagcgttagaaagagagtgttcatag 339  Q
    |||||  ||||| |||||||||||||||| |||||    
T  7709785 tgtta--gagagtgttagaaagagagtgtccatag 7709753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 6951833 - 6951771
Alignment:
Q  213 tcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtgg 275  Q
    ||||||| |||||||||||||| | ||||||||||||||||| ||  |||||| |||||||||    
T  6951833 tcctattggatgaaactcatgtgggtctcaccactttatgtgggatccattttcaatgtgtgg 6951771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 28566660 - 28566603
Alignment:
Q  26 tgtttggatgaaagaatttttggaggtaatataattttagatgataattcaaattttt 83  Q
    |||||||| |||||||||||   | |||||||||||||||| ||||||||||||||||    
T  28566660 tgtttggaagaaagaattttacaaagtaatataattttagaagataattcaaattttt 28566603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 864221 - 864274
Alignment:
Q  285 ttcacccaataa-agagtgagtgttatagagagcgttagaaagagagtgttcatag 339  Q
    |||||||||||| |||||||||||||  ||||| ||| ||||||||||||||||||    
T  864221 ttcacccaataagagagtgagtgtta--gagagtgtttgaaagagagtgttcatag 864274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 5140011 - 5140079
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta 277  Q
    ||||||||||| | |||||||||||  | | ||||||||||||||| ||  |||||| |||||||||||    
T  5140011 actctcctattgggtgaaactcatgcgggtttcaccactttatgtgggatccattttcaatgtgtggta 5140079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 42635443 - 42635379
Alignment:
Q  213 tcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta 277  Q
    ||||||| |||||||||||||| | ||||| |||||||||||  |  |||||| |||||||||||    
T  42635443 tcctattggatgaaactcatgtgggtctcatcactttatgtggaatccattttcaatgtgtggta 42635379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 339
Target Start/End: Original strand, 54186964 - 54187105
Alignment:
Q  203 acatttactctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggtatc---atata-ttcacccaataa-a 297  Q
    ||||| ||||||||||| | ||||||||||||  ||||||||| |||||||| ||  ||||| |||||||||||| |   ||  | |||||||||||| |    
T  54186964 acattcactctcctattgggtgaaactcatgtgaatctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcacccaataaga 54187063  T
Q  298 gagtgagtgttatagagagcgttagaaagagagtgttcatag 339  Q
    |||||||||||| |||||| |||||||||||||||| |||||    
T  54187064 gagtgagtgttagagagagtgttagaaagagagtgtccatag 54187105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 338
Target Start/End: Complemental strand, 29235793 - 29235653
Alignment:
Q  203 acatttactctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggtatcat----atattcacccaataa-a 297  Q
    ||||| ||| ||||||| | |||||||||| |   ||||||||||||||||  ||  ||||| |||||||||||||| |    |  |||||||||||| |    
T  29235793 acattcactttcctattgggtgaaactcatatgagtctcaccactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataaga 29235694  T
Q  298 gagtgagtgttatagagagcgttagaaagagagtgttcata 338  Q
    |||||||||||| |||||| |||||||||||||||| ||||    
T  29235693 gagtgagtgttagagagagtgttagaaagagagtgtccata 29235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 48543264 - 48543319
Alignment:
Q  285 ttcacccaataa-agagtgagtgttatagagagcgttagaaagagagtgttcatag 339  Q
    |||||||||||| ||||||||||||  |||||| ||||||||||||||||||||||    
T  48543264 ttcacccaataagagagtgagtgttggagagagtgttagaaagagagtgttcatag 48543319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 338
Target Start/End: Complemental strand, 13639528 - 13639408
Alignment:
Q  223 tgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggtatc---atatatt-cacccaataaa-gagtgagtgttatagagagc 317  Q
    |||||||||||| | ||||||||||||||||||||  |||||  |||||||| || |   ||  ||| || |||||||| |||||| ||||| ||||||     
T  13639528 tgaaactcatgtgggtctcaccactttatgtgagatccatttccaatgtgtgatacccacatgaatttcatccaataaaagagtgactgttagagagagt 13639429  T
Q  318 gttagaaagagagtgttcata 338  Q
    |||||||||||||||||||||    
T  13639428 gttagaaagagagtgttcata 13639408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 332
Target Start/End: Complemental strand, 38602948 - 38602820
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta-tcatata---ttcacccaat-aaagagtga 303  Q
    ||||||||||| | ||||||||||||   |||||| |||||||||| ||  |||||| |||||||||||  || |||   || ||| ||| |||||||||    
T  38602948 actctcctattgggtgaaactcatgtgagtctcactactttatgtgggatccattttcaatgtgtggtacccacataaattttaccgaataaaagagtga 38602849  T
Q  304 gtgttatagagagcgttagaaagagagtg 332  Q
    || ||| |||||| |||||||||||||||    
T  38602848 gtattagagagagtgttagaaagagagtg 38602820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 21417731 - 21417666
Alignment:
Q  52 taatataattttagatgataattcaaatttttctatgtaagttttattgttttgatgagaaatttg 117  Q
    |||||||||||||||  |||||||||||||||| | |||| ||| |||||||  |||| |||||||    
T  21417731 taatataattttagaaaataattcaaatttttcgacgtaaatttaattgtttgaatgataaatttg 21417666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 52366636 - 52366587
Alignment:
Q  225 aaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtg 274  Q
    |||||||||||| |||||||||||||| ||| | ||||| ||||||||||    
T  52366636 aaactcatgtaggtctcaccactttatatgaaattcattcttaatgtgtg 52366587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 19079051 - 19078916
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta---tcat-atattcacccaataa-agagtga 303  Q
    ||||||||||| | |||||||||||| | ||||||||||||||||| ||  |||||  |||||||||||    ||| |  |||||||||||| |||||||    
T  19079051 actctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtga 19078952  T
Q  304 gtgttatagagagcgttagaaagagagtgttcatag 339  Q
    |||||| |||||| |||||||| ||||||| |||||    
T  19078951 gtgttagagagagtgttagaaacagagtgtccatag 19078916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 19126939 - 19126804
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta---tcat-atattcacccaataa-agagtga 303  Q
    ||||||||||| | |||||||||||| | ||||||||||||||||| ||  |||||  |||||||||||    ||| |  |||||||||||| |||||||    
T  19126939 actctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtga 19126840  T
Q  304 gtgttatagagagcgttagaaagagagtgttcatag 339  Q
    |||||| |||||| |||||||| ||||||| |||||    
T  19126839 gtgttagagagagtgttagaaacagagtgtccatag 19126804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 24886177 - 24886042
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggtatc---atatatt-cacccaataaa-gagtga 303  Q
    ||||||||||| | |||||||||||| | ||||||| ||||||||| ||   ||||  ||||||||||| |   ||  ||| ||||||||||| ||||||    
T  24886177 actctcctattgggtgaaactcatgtgggtctcaccgctttatgtgggatctatttacaatgtgtggtacccacatgaatttcacccaataaaagagtga 24886078  T
Q  304 gtgttatagagagcgttagaaagagagtgttcatag 339  Q
    |||||| |||||| |||||||||||| ||| |||||    
T  24886077 gtgttagagagagtgttagaaagagaatgtccatag 24886042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 338
Target Start/End: Complemental strand, 29068218 - 29068084
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta---tcatata-ttcacccaat-aaagagtga 303  Q
    ||||||||||| |||||||||||||| | |||||||| |||||||| ||   ||||  |||||||||||    ||  || |||||||||| ||| |||||    
T  29068218 actctcctattggatgaaactcatgtgggtctcaccattttatgtgggatcaatttccaatgtgtggtacccacacgtatttcacccaataaaatagtga 29068119  T
Q  304 gtgttatagagagcgttagaaagagagtgttcata 338  Q
    |||||| ||| || |||||||||||||||| ||||    
T  29068118 gtgttagagaaagtgttagaaagagagtgtccata 29068084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 15427489 - 15427600
Alignment:
Q  42 tttttggaggtaatataattttagatgataattcaaatttttctatgtaagttttattg----ttttgatgagaaatttgtag-attttcaaaatgaatg 136  Q
    ||||| |||||| | |||||||| | |||| ||||||||  |||||||||||||||| |    ||||||||| |||||||  | |||||||||||||| |    
T  15427489 ttttttgaggtactgtaattttaaaggatagttcaaattcctctatgtaagttttatcgttaattttgatgataaatttgaggaattttcaaaatgaagg 15427588  T
Q  137 aattttatgaag 148  Q
    ||||||| ||||    
T  15427589 aattttaagaag 15427600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 338
Target Start/End: Original strand, 33440545 - 33440679
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta---tcat-atattcacccaataa-agagtga 303  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||| ||  |||||  |||||||||||    ||| |  |||||||||||| |||||||    
T  33440545 actctcctattaggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtga 33440644  T
Q  304 gtgttatagagagcgttagaaagagagtgttcata 338  Q
     ||||| |||||| |||| ||||||||||| ||||    
T  33440645 atgttagagagagtgttataaagagagtgtccata 33440679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 338
Target Start/End: Complemental strand, 28700679 - 28700559
Alignment:
Q  223 tgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggtatc---atatattca-cccaataa-agagtgagtgttatagagagc 317  Q
    ||||||||||||   ||||||||||||||||| || ||||||  ||| ||||||| |   ||| ||| | |||||||| ||||||||||||| ||||||     
T  28700679 tgaaactcatgtgagtctcaccactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtgagtgttagagagagt 28700580  T
Q  318 gttagaaagagagtgttcata 338  Q
    |||||||||||||||| ||||    
T  28700579 gttagaaagagagtgtacata 28700559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 38867626 - 38867578
Alignment:
Q  39 gaatttttggaggtaatataattttagatgataattcaaatttttctat 87  Q
    |||||||| |||||||  |||||||||||||||||||||||| ||||||    
T  38867626 gaattttttgaggtaacttaattttagatgataattcaaattcttctat 38867578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 40496039 - 40496097
Alignment:
Q  51 gtaatataattttagatgataattcaaatttttctatgtaagttttattgttttgatga 109  Q
    ||||| |||| ||| | ||||||||||| |||||||||||| ||||||||||| |||||    
T  40496039 gtaatgtaatattaaaggataattcaaaattttctatgtaaattttattgtttggatga 40496097  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 31024224 - 31024175
Alignment:
Q  223 tgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtg 272  Q
    |||||||||||| | ||||||||||||||||| || |||||| |||||||    
T  31024224 tgaaactcatgtgggtctcaccactttatgtgggattcatttataatgtg 31024175  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 339
Target Start/End: Complemental strand, 17878818 - 17878685
Alignment:
Q  211 tctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta---tcat-atattcacccaataa-agagtgagt 305  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| ||   |||| ||||||||| ||    ||| |  |||||||||||| ||||| | |    
T  17878818 tctcctattagctgaaactcatgtcgatctcaccactttatgtgggatctatttctaatgtgtgatacccacatgactttcacccaataagagagtaaat 17878719  T
Q  306 gttatagagagcgttagaaagagagtgttcatag 339  Q
    |||| |||||| |||||||||||||||| |||||    
T  17878718 gttaaagagagtgttagaaagagagtgtccatag 17878685  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 333
Target Start/End: Complemental strand, 47822119 - 47821990
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggtatc---atatatt-cacccaata-aagagtga 303  Q
    ||||| ||||| | |||||| ||||| ||||||||||||||||||| ||  |||||  ||||||||||| |   ||  ||| ||||||||| ||||||||    
T  47822119 actcttctattgggtgaaacccatgtggatctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaatataagagtga 47822020  T
Q  304 gtgttatagagagcgttagaaagagagtgt 333  Q
    |||||| |||||| | ||||||||||||||    
T  47822019 gtgttagagagagtgctagaaagagagtgt 47821990  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 43930080 - 43930134
Alignment:
Q  285 ttcacccaataaa-gagtgagtgttatagagagcgttagaaagagagtgttcata 338  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||||| ||||    
T  43930080 ttcacccaataaaagagtgagtgttagagagagtgttagaaagagagtgtccata 43930134  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 557432 - 557483
Alignment:
Q  223 tgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtg 274  Q
    |||||||||||| | ||||||||||||||||| ||  |||||||||||||||    
T  557432 tgaaactcatgtgggtctcaccactttatgtgggatccatttttaatgtgtg 557483  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 22155941 - 22155984
Alignment:
Q  295 aaagagtgagtgttatagagagcgttagaaagagagtgttcata 338  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||    
T  22155941 aaagagtgagtgttagagagagtgttagaaagagagagttcata 22155984  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 22211856 - 22211899
Alignment:
Q  295 aaagagtgagtgttatagagagcgttagaaagagagtgttcata 338  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||    
T  22211856 aaagagtgagtgttagagagagtgttagaaagagagagttcata 22211899  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 3399027 - 3399092
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtg 274  Q
    ||||||||||  | |||||||||||| | |||||||||||||||| ||| | ||||| ||||||||    
T  3399027 actctcctatatggtgaaactcatgtgggtctcaccactttatgtaagatttattttcaatgtgtg 3399092  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 36738597 - 36738552
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtg 254  Q
    ||||||||||| | |||||||||||| | |||||||||||||||||    
T  36738597 actctcctattgggtgaaactcatgtgggtctcaccactttatgtg 36738552  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 43480382 - 43480314
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta 277  Q
    ||||||||||| | |||||||||||| | ||||||||||||||||| ||  |||||| |||||||||||    
T  43480382 actctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccattttcaatgtgtggta 43480314  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 51823186 - 51823131
Alignment:
Q  221 gatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggt 276  Q
    |||||||||||||| | ||||||||||||||||| ||  |||||||||||||||||    
T  51823186 gatgaaactcatgtgggtctcaccactttatgtgcgatccatttttaatgtgtggt 51823131  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 31699600 - 31699655
Alignment:
Q  285 ttcacccaataa-agagtgagtgttatagagagcgttagaaagagagtgttcatag 339  Q
    |||||||||||| ||||||||||||  |||||| |||||||||||||||| |||||    
T  31699600 ttcacccaataagagagtgagtgttggagagagtgttagaaagagagtgtccatag 31699655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 37306464 - 37306413
Alignment:
Q  285 ttcacccaata-aagagtgagtgttatagagagcgttagaaagagagtgttc 335  Q
    ||||||||||| |||||||||||||| |||||| | ||||||||||||||||    
T  37306464 ttcacccaatataagagtgagtgttagagagagtgctagaaagagagtgttc 37306413  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 37306461 - 37306515
Alignment:
Q  223 tgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta 277  Q
    |||||||||||| | ||||||||||||||||||||  |||||  |||||||||||    
T  37306461 tgaaactcatgtgggtctcaccactttatgtgagatccatttccaatgtgtggta 37306515  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 30111906 - 30111861
Alignment:
Q  209 actctcctattagatgaaactcatgtagatctcaccactttatgtg 254  Q
    |||||| |||| | |||||||||||| |||||||||||||||||||    
T  30111906 actctcatattgggtgaaactcatgtggatctcaccactttatgtg 30111861  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 32439536 - 32439481
Alignment:
Q  285 ttcacccaataa-agagtgagtgttatagagagcgttagaaagagagtgttcatag 339  Q
    |||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||    
T  32439536 ttcacccaataagagagtgagtgttagagagagtgtttgaaagagagtgttcatag 32439481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 7447610 - 7447675
Alignment:
Q  212 ctcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta 277  Q
    |||||||| | |||| ||||||| | ||||||||||||||||| ||  ||||| ||||||||||||    
T  7447610 ctcctattgggtgaagctcatgtgggtctcaccactttatgtgggatccatttctaatgtgtggta 7447675  T

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Target: scaffold0922 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 791 - 735
Alignment:
Q  223 tgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggtatc 279  Q
    |||||||||||| | ||||||||||||||||| ||  |||||| |||||||||||||    
T  791 tgaaactcatgtgggtctcaccactttatgtgggatccattttcaatgtgtggtatc 735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 17190654 - 17190718
Alignment:
Q  213 tcctattagatgaaactcatgtagatctcaccactttatgtgagactcatttttaatgtgtggta 277  Q
    ||||||||| ||||||| |||| | ||||||||||||||||| ||  ||||| ||||||||||||    
T  17190654 tcctattaggtgaaacttatgtgggtctcaccactttatgtgggatccatttctaatgtgtggta 17190718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 17190652 - 17190612
Alignment:
Q  299 agtgagtgttatagagagcgttagaaagagagtgttcatag 339  Q
    ||||||||||| |||||| | ||||||||||||||||||||    
T  17190652 agtgagtgttagagagagtgctagaaagagagtgttcatag 17190612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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