View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19139_low_2 (Length: 725)

Name: NF19139_low_2
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19139_low_2
NF19139_low_2
[»] chr1 (3 HSPs)
chr1 (13-710)||(49168998-49169713)
chr1 (294-359)||(2790960-2791025)
chr1 (294-359)||(14471942-14472007)
[»] chr8 (1 HSPs)
chr8 (294-359)||(91429-91494)
[»] chr7 (1 HSPs)
chr7 (294-359)||(11716232-11716297)
[»] chr6 (2 HSPs)
chr6 (294-359)||(16772851-16772916)
chr6 (294-359)||(32707854-32707919)
[»] chr5 (2 HSPs)
chr5 (294-359)||(12842576-12842641)
chr5 (594-627)||(31226604-31226637)
[»] chr4 (1 HSPs)
chr4 (294-359)||(14026656-14026721)
[»] chr3 (1 HSPs)
chr3 (294-359)||(5378413-5378478)


Alignment Details
Target: chr1 (Bit Score: 611; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 13 - 710
Target Start/End: Original strand, 49168998 - 49169713
Alignment:
Q  13 agaagtcaagagagaatatactctttaattctcaaattagaaactcacaattttaca---------atgatcttacatgaaaggaatgaccttatttata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |         ||||||||||||||||||||||||||||||||||    
T  49168998 agaagtcaagagagaatatactctttaattctcaaattagaaactcacaattttagataaactttaatgatcttacatgaaaggaatgaccttatttata 49169097  T
Q  104 ctaatcttagaggcaaaattacatatgaaatagtagtagtaatcaatacatcaatggaaaca--------taaaatttggaaatgtcaaacatagtagct 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||| |||||||||    
T  49169098 ctaatcttagaggcaaaattacatatgaaatagtagtagtaatcaatacatcaatggaaacacagtctggtaaaatttggaaatgtcaaagatagtagct 49169197  T
Q  196 tagagtcaataataggatggtgcaagggatcttgactccctcgaaataataacaaatccatcatcccaatatggcgaaatattggcaacattgttacatg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  49169198 tagagtcaataataggatggtgcaagggatcttgactccctcgaaataataacaaatcaatcatcccaatatggcgaaagattggcaacattgttacatg 49169297  T
Q  296 ctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactatattattgaagggactatcaactctttgagataacgt 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  49169298 ctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactatattattgaagggaccatcaactctttgagataacgt 49169397  T
Q  396 ttgaaaacatattaattcacaaactatctgccgaaactcaaagacatcaaaatatagtttcttattgatgacaagcatattaattcattagtactagtat 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49169398 ttgaaaacatattaattcacaaactatctgccgaaactcaaagacatcaaaatatagtttcttattgatgacaagcatattaattcattagtactagtat 49169497  T
Q  496 tgata-attttgttagcatcatcagtttgaagcactttaactcctacaaccttgtagcatcaacctcatcttatatacgtggcatatagccatttttatt 594  Q
    |||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49169498 tgatattttttgttagcatcatcagtttgaagcactttaactcatacaaccttgtagcatcaacctcatcttatatacgtggcatatagccatttttatt 49169597  T
Q  595 ccttgatgtaattatacaaaaagcatgagctacatatatagcaaccgaaatctttgacgatgataagtgtgatccgataaatatagatgttggaacaact 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49169598 ccttgatgtaattatacaaaaagcatgagctacatatatagcaaccgaaatctgtgacgatgataagtgtgatccgataaatatagatgttggaacaact 49169697  T
Q  695 cttaacagaacataat 710  Q
    ||||||| ||||||||    
T  49169698 cttaacaaaacataat 49169713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 2790960 - 2791025
Alignment:
Q  294 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 359  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| ||||||||||| || |||||    
T  2790960 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcattgattttttgaactat 2791025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 14471942 - 14472007
Alignment:
Q  294 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 359  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| ||||||||||| || |||||    
T  14471942 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcattgattttctgtactat 14472007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 91494 - 91429
Alignment:
Q  294 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 359  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| || |||||||| || |||||    
T  91494 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactat 91429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 11716297 - 11716232
Alignment:
Q  294 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 359  Q
    |||||||||||||||| || || ||| ||| |||||||||| ||| ||||||||||| || |||||    
T  11716297 tgctgagacaccataggttcctagcaattctaccttgtaagcattgtcattgattttttgaactat 11716232  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 16772851 - 16772916
Alignment:
Q  294 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 359  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| || |||||||| || |||||    
T  16772851 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactat 16772916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 32707919 - 32707854
Alignment:
Q  294 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 359  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| || |||||||| || |||||    
T  32707919 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactat 32707854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 12842641 - 12842576
Alignment:
Q  294 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 359  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| || |||||||| || |||||    
T  12842641 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactat 12842576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 594 - 627
Target Start/End: Original strand, 31226604 - 31226637
Alignment:
Q  594 tccttgatgtaattatacaaaaagcatgagctac 627  Q
    ||||||||||| ||||||||||||||||||||||    
T  31226604 tccttgatgtagttatacaaaaagcatgagctac 31226637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 14026721 - 14026656
Alignment:
Q  294 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 359  Q
    |||||||||||||||| || |||| | ||| |||||||||| ||| ||||||||||| || |||||    
T  14026721 tgctgagacaccataggttcctggaaattctaccttgtaagcattgtcattgattttttgaactat 14026656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 359
Target Start/End: Original strand, 5378413 - 5378478
Alignment:
Q  294 tgctgagacaccatagatttctggcagttcaaccttgtaaggattttcattgattttatgcactat 359  Q
    |||||||||||||||| || |||||| ||| |||||||||| ||| || |||||||| || |||||    
T  5378413 tgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactat 5378478  T

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