View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_low_21 (Length: 272)
Name: NF19139_low_21
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 2818732 - 2818473
Alignment:
| Q |
1 |
ggttatggaccctagtagctgcattctgaatcttaacacaatttggtatatgttgatcaatgatcatctaagtatatatattgtatatgaggattacaga |
100 |
Q |
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| T |
2818732 |
ggttatggaccctagtagctgcattctgaatcttaacacaatttggtatatgttgatcaatgatcatctaagtatatatattgtatatgaggagtaaaga |
2818633 |
T |
|
| Q |
101 |
gtaaataatagtttgttcttcaattgcacttcaagattcaacgagaataatctttacggaaaaggaaaaataatgaaga---tcagctttaagcattatg |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
2818632 |
gtaaataatagtttgttcttcaattgcacttcaagattcaacgagaataatctttacggaaaaggaaaaataatgaagatgttgagctttaagcattatg |
2818533 |
T |
|
| Q |
198 |
tcttcacttgaaggagagcaataaacaatagagttatagagaggtttacacgtgcacact |
257 |
Q |
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| T |
2818532 |
tcttcacttgaaggagagcaataaataatagagttatagagaggtttacacgtgcacact |
2818473 |
T |
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