View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_low_22 (Length: 271)
Name: NF19139_low_22
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 8429309 - 8429122
Alignment:
| Q |
17 |
aattaggtaattcgactcagggtgcctatgatgctatgatgtttgatatccttacaatgagaacatactcattaggctaagcttccaaattgcttgttcc |
116 |
Q |
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| T |
8429309 |
aattaggtaattcgactcagggtgcctatgatgctatgatgtttgatatccttacaatgagaacatactcattttgctaagcttccaaattgcttgttcc |
8429210 |
T |
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| Q |
117 |
attgctcaaaagtgccaagttcattaggtgaaacagaaggcctcacttcttgcagggaattcttgaaatcctacacaaattgaagaaa |
204 |
Q |
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| T |
8429209 |
attgctcaaaagtgccaagttcattaggtgaaacagaaggcctcacttcttgcagggaattcttgaagtcctgcacaaagtgaagaaa |
8429122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 65 - 260
Target Start/End: Original strand, 8389718 - 8389914
Alignment:
| Q |
65 |
tccttacaatgagaacatactcattaggctaagcttccaaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggcctcactt |
164 |
Q |
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| T |
8389718 |
tccttacaatgagaacatactcattttgctaaggttccaaattgcttgttccattgctcaaaaatgccaagatcattaggtgaaacagaaggcctcactt |
8389817 |
T |
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| Q |
165 |
cttgcagggaattcttgaaatcctacacaaattgaagaaaaccgttaaaaattaacaatcaa-cctgaaaaatatttttgaaatttttctgttctgt |
260 |
Q |
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| T |
8389818 |
cttgcagggaattcttgaagtcctgcacaaagtgaataaatcatttaaaaattaataatcaatcttggaaaatatttttgaaatttctatgttctgt |
8389914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 92 - 262
Target Start/End: Complemental strand, 8425800 - 8425630
Alignment:
| Q |
92 |
gctaagcttccaaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggcctcacttcttgcagggaattcttgaaatcctaca |
191 |
Q |
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| T |
8425800 |
gctaagcttccaaattgtttgttccattgctcgtaagtgccaagttcattaggtgaaacagaaggcctcacctgttgcaaggaaatcttgaagtcctaca |
8425701 |
T |
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| Q |
192 |
caaattgaagaaaaccgttaaaaattaacaatcaacctgaaaaatatttttgaaatttttctgttctgtgc |
262 |
Q |
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| T |
8425700 |
caaattgaagaaaacctttaaaaattaataatgaacctgacaaatatttttgaaatttttatgttctgtgc |
8425630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 99 - 249
Target Start/End: Original strand, 8396693 - 8396843
Alignment:
| Q |
99 |
ttccaaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggcctcacttcttgcagggaattcttgaaatcctacacaaattg |
198 |
Q |
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| T |
8396693 |
ttccaaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggccttatctcttgcagggaattcttgaagtcctacacaaagtg |
8396792 |
T |
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| Q |
199 |
aagaaaaccgttaaaaattaacaatcaacctgaaaaatatttttgaaattt |
249 |
Q |
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| T |
8396793 |
aagaaatcattttaaaattaatattcaccttgagaaatattttttaaattt |
8396843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 8410406 - 8410260
Alignment:
| Q |
103 |
aaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggcctcacttcttgcagggaattcttgaaatcctacacaaattgaaga |
202 |
Q |
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| T |
8410406 |
aaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggccttatctcttgcatggaattcatgaagtcctacacaaagtgaaga |
8410307 |
T |
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| Q |
203 |
aaaccgttaaaaattaacaatcaacctgaaaaatatttttgaaattt |
249 |
Q |
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| T |
8410306 |
aatcttttcaaaattaataatctatttgagaaatatttttgaaattt |
8410260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 8415615 - 8415493
Alignment:
| Q |
129 |
tgccaagttcattaggtgaaacagaaggcctcacttcttgcagggaattcttgaaatcctacacaaattgaagaaaaccgttaaaaattaacaatcaacc |
228 |
Q |
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| T |
8415615 |
tgccaaattcattaggtgaaacagaaggcttcacttcttgcagggaattcttgaagtccttcacaaattgaagaaaacctttaaaaattaataatcaacc |
8415516 |
T |
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| Q |
229 |
tgaaaaatatttttgaaattttt |
251 |
Q |
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| T |
8415515 |
ttagaatttttttcgaaattttt |
8415493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 94 - 249
Target Start/End: Original strand, 8391799 - 8391954
Alignment:
| Q |
94 |
taagcttccaaattgcttgttccattgctcaaaagtgccaagttcattaggtgaaacagaaggcctcacttcttgcagggaattcttgaaatcctacaca |
193 |
Q |
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| T |
8391799 |
taagcttccaaattgcttgttccattcctcataaattccaagttcattagctgaaacagaagaccttatatctttcatggaattcaagaagtcctacaca |
8391898 |
T |
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| Q |
194 |
aattgaagaaaaccgttaaaaattaacaatcaacctgaaaaatatttttgaaattt |
249 |
Q |
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| T |
8391899 |
aagtgaagaaatcttttcaaaattaattatcaatttgagaaatatttttgaaattt |
8391954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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