View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_low_24 (Length: 255)
Name: NF19139_low_24
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 488346 - 488545
Alignment:
| Q |
19 |
gtaatcagttgctagagatggtgggtgagaagtatggtggaagagttgatttggccaaagcatattacaaagctctctcaacttcagtgaaaagacattt |
118 |
Q |
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| T |
488346 |
gtaatcagttgctagagatggtgggtgagaagtatggtggaagagttgatttggccaaagcatattacaaagctctctcaacttcagtgaaaaaacattt |
488445 |
T |
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| Q |
119 |
caatggtaatggtgtcattgctagcatggaacattgcaatgatttcatgttgcttggaactgaagccatatcccttggtcgtgttggtatgtcacataaa |
218 |
Q |
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| T |
488446 |
caatggtaatggtgtcattgctagcatggaacattgcaatgatttcatgttgcttggaactgaagccatatcccttggtcgtgttggtatgtcacataaa |
488545 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 43638307 - 43638210
Alignment:
| Q |
113 |
acatttcaatggtaatggtgtcattgctagcatggaacattgcaatgatttcatgttgcttggaactgaagccatatcccttggtcgtgttggtatgt |
210 |
Q |
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| T |
43638307 |
acatttcaaaggcaatggtgtcatttccagtatgcaacaatgcaacgatttcatgttccttggtacagaaaccatttcacttggacgagttggtatgt |
43638210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 34697393 - 34697240
Alignment:
| Q |
49 |
agtatggtggaagagttgatttggccaaagcatattacaaagctctctcaacttcagtgaaaagacatttcaatggtaatggtgtcattgctagcatgga |
148 |
Q |
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| T |
34697393 |
agtatggtggacgtgttgagcttgctaaagcctattacaaagcactgacctcatcagtgaagaaacatttcaatggcaatggagttattgccagcatgga |
34697294 |
T |
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| Q |
149 |
acattgcaatgatttcatgttgcttggaactgaagccatatcccttggtcgtgt |
202 |
Q |
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| T |
34697293 |
gcattgcaacgacttctttctccttggcacagaagccatttcccttggacgtgt |
34697240 |
T |
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