View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19139_low_25 (Length: 249)

Name: NF19139_low_25
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19139_low_25
NF19139_low_25
[»] chr3 (19 HSPs)
chr3 (31-148)||(26403558-26403679)
chr3 (147-241)||(43207447-43207542)
chr3 (149-238)||(53507094-53507183)
chr3 (148-238)||(44708281-44708372)
chr3 (149-238)||(50939445-50939534)
chr3 (149-241)||(48156942-48157036)
chr3 (148-241)||(9878894-9878986)
chr3 (149-238)||(34290849-34290940)
chr3 (166-238)||(54407368-54407439)
chr3 (148-214)||(48720530-48720596)
chr3 (158-215)||(47467591-47467648)
chr3 (164-215)||(50258733-50258784)
chr3 (163-213)||(36605861-36605911)
chr3 (164-213)||(27078819-27078868)
chr3 (164-213)||(27084616-27084665)
chr3 (164-213)||(36716276-36716325)
chr3 (164-213)||(38681348-38681397)
chr3 (164-213)||(54619454-54619503)
chr3 (164-200)||(3954866-3954902)
[»] chr6 (13 HSPs)
chr6 (147-241)||(20711925-20712020)
chr6 (164-241)||(27788895-27788972)
chr6 (147-238)||(17353757-17353848)
chr6 (147-238)||(235435-235527)
chr6 (164-238)||(19986982-19987056)
chr6 (148-238)||(28075587-28075678)
chr6 (161-215)||(30832666-30832720)
chr6 (164-214)||(23070889-23070939)
chr6 (164-213)||(11081684-11081733)
chr6 (164-213)||(13727650-13727699)
chr6 (164-225)||(19741212-19741273)
chr6 (164-200)||(21280349-21280385)
chr6 (164-200)||(27314778-27314814)
[»] chr8 (10 HSPs)
chr8 (147-238)||(42600582-42600674)
chr8 (164-241)||(23798468-23798545)
chr8 (164-238)||(23606831-23606905)
chr8 (164-238)||(10917210-10917283)
chr8 (164-215)||(20003875-20003926)
chr8 (164-239)||(45472207-45472281)
chr8 (164-213)||(2952473-2952522)
chr8 (164-213)||(3048774-3048823)
chr8 (164-213)||(5860996-5861045)
chr8 (165-213)||(30883127-30883175)
[»] chr1 (15 HSPs)
chr1 (149-238)||(40502000-40502090)
chr1 (148-242)||(9173228-9173322)
chr1 (149-238)||(13913693-13913782)
chr1 (161-238)||(19955544-19955620)
chr1 (149-238)||(17168769-17168857)
chr1 (164-238)||(27559463-27559538)
chr1 (148-238)||(44895466-44895557)
chr1 (164-241)||(1367084-1367161)
chr1 (146-238)||(51607648-51607742)
chr1 (164-239)||(23181727-23181801)
chr1 (164-215)||(14146221-14146272)
chr1 (164-197)||(5027991-5028024)
chr1 (164-213)||(27906949-27906998)
chr1 (164-213)||(44655555-44655604)
chr1 (164-200)||(41697293-41697329)
[»] chr7 (13 HSPs)
chr7 (149-241)||(47985176-47985268)
chr7 (148-241)||(19691896-19691990)
chr7 (148-242)||(38415081-38415175)
chr7 (164-238)||(24525894-24525968)
chr7 (164-238)||(48984054-48984127)
chr7 (149-238)||(20091491-20091579)
chr7 (150-238)||(25010254-25010342)
chr7 (148-238)||(10329619-10329710)
chr7 (164-238)||(23551281-23551355)
chr7 (164-214)||(28749597-28749647)
chr7 (146-197)||(10027615-10027667)
chr7 (164-200)||(12596443-12596479)
chr7 (158-213)||(18777019-18777075)
[»] chr2 (12 HSPs)
chr2 (149-241)||(26715931-26716023)
chr2 (149-238)||(27506951-27507041)
chr2 (164-241)||(9045848-9045924)
chr2 (147-238)||(24410234-24410325)
chr2 (169-238)||(8327488-8327556)
chr2 (149-234)||(10762779-10762865)
chr2 (164-213)||(4505695-4505744)
chr2 (164-215)||(3952915-3952966)
chr2 (164-213)||(3155019-3155068)
chr2 (158-195)||(5952949-5952986)
chr2 (164-213)||(6964808-6964857)
chr2 (145-196)||(52968-53020)
[»] chr4 (24 HSPs)
chr4 (164-238)||(24969258-24969332)
chr4 (152-238)||(40089328-40089413)
chr4 (164-241)||(16844843-16844921)
chr4 (164-241)||(32128408-32128485)
chr4 (152-238)||(54083454-54083541)
chr4 (145-241)||(2790947-2791044)
chr4 (149-214)||(38352489-38352554)
chr4 (166-241)||(16882601-16882675)
chr4 (164-238)||(37777434-37777509)
chr4 (149-238)||(19498313-19498402)
chr4 (167-231)||(34027407-34027471)
chr4 (165-223)||(35463958-35464016)
chr4 (149-197)||(54779441-54779490)
chr4 (161-213)||(38209842-38209894)
chr4 (164-215)||(1105447-1105498)
chr4 (164-235)||(10431421-10431492)
chr4 (164-239)||(35780532-35780606)
chr4 (158-200)||(9579483-9579525)
chr4 (158-200)||(9585178-9585220)
chr4 (164-214)||(45560704-45560754)
chr4 (164-213)||(55255096-55255145)
chr4 (164-200)||(5128997-5129033)
chr4 (164-224)||(17679233-17679293)
chr4 (164-224)||(47127997-47128057)
[»] chr5 (14 HSPs)
chr5 (164-235)||(16199005-16199076)
chr5 (149-238)||(27923885-27923974)
chr5 (148-241)||(38869567-38869660)
chr5 (149-238)||(7670728-7670816)
chr5 (167-238)||(9364113-9364183)
chr5 (149-238)||(40389743-40389831)
chr5 (164-241)||(16799530-16799606)
chr5 (164-215)||(15480228-15480279)
chr5 (164-215)||(19523109-19523160)
chr5 (164-213)||(34756615-34756664)
chr5 (164-200)||(22987481-22987517)
chr5 (164-232)||(30853282-30853350)
chr5 (164-200)||(31881604-31881640)
chr5 (149-213)||(34855925-34855989)
[»] scaffold0027 (1 HSPs)
scaffold0027 (147-238)||(4147-4238)
[»] scaffold0039 (1 HSPs)
scaffold0039 (149-223)||(106379-106454)
[»] scaffold0070 (1 HSPs)
scaffold0070 (164-200)||(1027-1063)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 26403558 - 26403679
Alignment:
Q  31 agtaaaacctgaaaaaactagtatcataaatttaataaacttttaattcaaagattaaaataaat----ttatctagtcgttcgggtttcaagttattag 126  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  26403558 agtaaaacctgaaaaaactagtataataaatttaataaacttttaattcaaagattaaaataaatttaattatctagtcgttcgggtttcaagttattag 26403657  T
Q  127 ctttatcaactatgtacctgat 148  Q
    ||||||||||||||||||||||    
T  26403658 ctttatcaactatgtacctgat 26403679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 43207542 - 43207447
Alignment:
Q  147 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  43207542 atcaggcccggtcctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactagtatta 43207447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 53507183 - 53507094
Alignment:
Q  149 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  53507183 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 53507094  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 44708281 - 44708372
Alignment:
Q  148 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||    
T  44708281 tcaggcccggctctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatatccactagta 44708372  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 50939534 - 50939445
Alignment:
Q  149 caggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  50939534 caggcccgtccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccaccagta 50939445  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 48156942 - 48157036
Alignment:
Q  149 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagttt-gtttttaatacccactagtatta 241  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||  ||||||||||||||||||||||    
T  48156942 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcaatcatgggcctaaattttattttttaatacccactagtatta 48157036  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 9878986 - 9878894
Alignment:
Q  148 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||  || ||||||||||||||||||||||    
T  9878986 tcaggtccggccctgagggggtgcaaacagctcaacagagctgggcctcccttaatcatgggcctcaa--ttttttttaatacccactagtatta 9878894  T

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Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 34290940 - 34290849
Alignment:
Q  149 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-gtttgtttttaatacccactagta 238  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||  ||| ||||||||| |||||||||    
T  34290940 caggcccgaccctgagggggtgcaaacagctcaacagagttgggcctccctcaggcatgggcctcaatttttttttttaatatccactagta 34290849  T

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Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 54407439 - 54407368
Alignment:
Q  166 ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  54407439 ggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa-tttttttttaatacctactagta 54407368  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 48720596 - 48720530
Alignment:
Q  148 tcaggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 214  Q
    |||||| || |||||| ||||||||||||||||||||||||| || |||||||||||||||||||||    
T  48720596 tcaggcacggccctgacgggtgcaaacagctcaacagagctgagcttccctcagtcatgggcctcaa 48720530  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 47467591 - 47467648
Alignment:
Q  158 ccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 215  Q
    ||||||||||||||||||||||||  |||||| ||||||||||   ||||||||||||    
T  47467591 ccctgaggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaag 47467648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 50258784 - 50258733
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 215  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  50258784 ggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaag 50258733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 36605861 - 36605911
Alignment:
Q  163 aggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    |||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  36605861 aggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36605911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 27078868 - 27078819
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  27078868 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27078819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 27084665 - 27084616
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  27084665 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27084616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 36716325 - 36716276
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  36716325 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 36716276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 38681397 - 38681348
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  38681397 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38681348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 54619503 - 54619454
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  54619503 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 54619454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 3954902 - 3954866
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctca 200  Q
    ||||||||||||||||||  |||||||||||||||||    
T  3954902 ggggtgcaaacagctcaaacgagctgggcctccctca 3954866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 20712020 - 20711925
Alignment:
Q  147 atcaggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  20712020 atcaggcccggccctgaggaggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactagtatta 20711925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 27788972 - 27788895
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  27788972 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaaatttttttttaatacccactagtatta 27788895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 17353757 - 17353848
Alignment:
Q  147 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  17353757 atcaggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 17353848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 235527 - 235435
Alignment:
Q  147 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  235527 atcaggcccgtccctgagggggtgcaaacagcttaacagagctgggcctccctcagtcatggaccttaattttttttttaatacccactagta 235435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 19986982 - 19987056
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||    
T  19986982 ggggtgcaaacagctcaacagagctgggcctccctcaattatgggcctcaaatttttttttaatacccactagta 19987056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 28075587 - 28075678
Alignment:
Q  148 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||||||| | |||||||| ||||||||||||||||||||| ||| ||| |||||||||||| |||| ||| |||||||||||||||||||    
T  28075587 tcaggcccggctctgagggggtgcaaacagctcaacagagctaggcttccttcagtcatgggcttcaattttttttttaatacccactagta 28075678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 30832720 - 30832666
Alignment:
Q  161 tgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 215  Q
    |||||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  30832720 tgaggggtgcaaacagctcaaatgagctgggcctccctcaaggatgggcctcaag 30832666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 23070939 - 23070889
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 214  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  23070939 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 23070889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 11081733 - 11081684
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  ||||| ||||||||| || |||||||||||    
T  11081733 ggggtgcaaacagctcaatggagctaggcctccctaaggcatgggcctca 11081684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 13727699 - 13727650
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  13727699 ggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctca 13727650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 19741273 - 19741212
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttta 225  Q
    ||||||||||||||||||  |||||||||||||||||   |||| |||||| ||| ||||||    
T  19741273 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatggacctcaatttttttttta 19741212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 21280349 - 21280385
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctca 200  Q
    ||||||||||||||||||  |||||||||||||||||    
T  21280349 ggggtgcaaacagctcaaacgagctgggcctccctca 21280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 27314814 - 27314778
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctca 200  Q
    ||||||||||||||||||  |||||||||||||||||    
T  27314814 ggggtgcaaacagctcaaacgagctgggcctccctca 27314778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 42600582 - 42600674
Alignment:
Q  147 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  42600582 atcaggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttatttttaatacccactagta 42600674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 23798545 - 23798468
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  23798545 ggggtgcgaacagctcaacaaagctgggcctccctcagtcatgggcctcaaatttttttttaatacccactagtatta 23798468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 23606905 - 23606831
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  23606905 ggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaaattttcttttaatacccactagta 23606831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 10917210 - 10917283
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||||||||||    
T  10917210 ggggtgcaaacagctcaacagagctgggcctccctcactcatgggccacaa-tttttttttaatacccactagta 10917283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 20003926 - 20003875
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 215  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  20003926 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 20003875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 45472207 - 45472281
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtat 239  Q
    ||||||||||||||||||| |||||||||| ||| ||   ||||||||||| ||| ||||| ||||||| ||||||    
T  45472207 ggggtgcaaacagctcaaccgagctgggccacccccaaggatgggcctcaa-ttttttttttatacccattagtat 45472281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 2952522 - 2952473
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  2952522 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 2952473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 3048823 - 3048774
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  3048823 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3048774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 5861045 - 5860996
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  5861045 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 5860996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 30883127 - 30883175
Alignment:
Q  165 gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    |||||||||||||||||  |||||||||||||||||   ||||||||||    
T  30883127 gggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 30883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 40502090 - 40502000
Alignment:
Q  149 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  40502090 caggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactagta 40502000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 9173322 - 9173228
Alignment:
Q  148 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtattat 242  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  9173322 tcaggcccggccctgagggggtgcaaacagctcaacagagttgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagtattat 9173228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 13913782 - 13913693
Alignment:
Q  149 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  13913782 caggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 13913693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 19955544 - 19955620
Alignment:
Q  161 tgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  19955544 tgaggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa-tttttttttaatacccactagta 19955620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 17168769 - 17168857
Alignment:
Q  149 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||  || |||||||||||||||||||    
T  17168769 caggcccgaccctgaggggatgcaaacagctcaatagagcttggcctccctcagtcatgggcctcaa--ttttttttaatacccactagta 17168857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 27559463 - 27559538
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-gtttgtttttaatacccactagta 238  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||||||    
T  27559463 ggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaatttttttttttaatacccactagta 27559538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 44895466 - 44895557
Alignment:
Q  148 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||| |||||||||    
T  44895466 tcaggctcggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggccacatttttttttttaatatccactagta 44895557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 1367161 - 1367084
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||    
T  1367161 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaaaaaaaattttaatacccactagtatta 1367084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 51607742 - 51607648
Alignment:
Q  146 gatcaggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca-agtttgtttttaatacccactagta 238  Q
    |||||||||||  | ||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||   ||| ||||||||| |||||||||    
T  51607742 gatcaggcccggtcatgaggtggtgcaaacagctcaatagagctgggccttcctcaatcatgggcctcattttttttttttaatatccactagta 51607648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 23181727 - 23181801
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtat 239  Q
    ||||||||||||||||||| |||||||||| ||| || | ||||||||||| ||| ||||| ||||||| ||||||    
T  23181727 ggggtgcaaacagctcaaccgagctgggccacccccaatgatgggcctcaaattt-ttttttatacccattagtat 23181801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 14146221 - 14146272
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 215  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  14146221 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 14146272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 5028024 - 5027991
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccc 197  Q
    ||||||||||||||||||| ||||||||||||||    
T  5028024 ggggtgcaaacagctcaaccgagctgggcctccc 5027991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 27906998 - 27906949
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  27906998 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 27906949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 44655555 - 44655604
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  44655555 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 44655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 41697329 - 41697293
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctca 200  Q
    ||||||||||||||||||  |||||||||||||||||    
T  41697329 ggggtgcaaacagctcaaacgagctgggcctccctca 41697293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 47985268 - 47985176
Alignment:
Q  149 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  47985268 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagtatta 47985176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 148 - 241
Target Start/End: Original strand, 19691896 - 19691990
Alignment:
Q  148 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtc-atgggcctcaagtttgtttttaatacccactagtatta 241  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||    
T  19691896 tcaggcccgaccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcaatgggcctcaa-tttttttttaataccaactagtatta 19691990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 38415175 - 38415081
Alignment:
Q  148 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtattat 242  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  38415175 tcaggcccggctctgaggggatgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaaattt-tttttaatacccactagtattat 38415081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 24525968 - 24525894
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  24525968 ggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaattttttttttaatacccactagta 24525894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 48984127 - 48984054
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  48984127 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 48984054  T

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Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 20091579 - 20091491
Alignment:
Q  149 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  20091579 caggcccgtccctggggggtgcaaacagctcaatagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccaccagta 20091491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 25010254 - 25010342
Alignment:
Q  150 aggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  25010254 aggcccggccctgagggggtacaaacagctcaacagagttgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 25010342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 10329710 - 10329619
Alignment:
Q  148 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||||  ||||||||| ||||||||| ||||||| ||| || |||||||||||||||||||||| ||| |||||||||||||||||||    
T  10329710 tcaggcccggtcctgagggggtgcaaacagttcaacagcgctaggtctccctcagtcatgggcctcaattttttttttaatacccactagta 10329619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 23551355 - 23551281
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||||||||||||| |||| ||| ||||||||| ||||||||||||| ||| |||||||||||||||||||    
T  23551355 ggggtgcaaacagctcaatagagttggacctccctcaatcatgggcctcaattttttttttaatacccactagta 23551281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 28749597 - 28749647
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 214  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  28749597 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaa 28749647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 10027615 - 10027667
Alignment:
Q  146 gatcaggcccgaccctgagg-ggtgcaaacagctcaacagagctgggcctccc 197  Q
    ||||||| ||| ||||| || |||||||||||||| |||||||||||||||||    
T  10027615 gatcagggccggccctggggaggtgcaaacagctctacagagctgggcctccc 10027667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 12596479 - 12596443
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctca 200  Q
    ||||||||||||||||||  |||||||||||||||||    
T  12596479 ggggtgcaaacagctcaaacgagctgggcctccctca 12596443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 18777075 - 18777019
Alignment:
Q  158 ccctgagg-ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    |||||||| ||||||||||||||||  |||||||||||||||||   ||||||||||    
T  18777075 ccctgaggaggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 18777019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 26715931 - 26716023
Alignment:
Q  149 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  26715931 caggcccggccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagtatta 26716023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 27507041 - 27506951
Alignment:
Q  149 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  27507041 caggcccgtccctgagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccattagta 27506951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 9045848 - 9045924
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||    
T  9045848 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccattagtatta 9045924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 24410234 - 24410325
Alignment:
Q  147 atcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  24410234 atcaggcccgtccctaagggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccattagta 24410325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 8327488 - 8327556
Alignment:
Q  169 gcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  8327488 gcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 8327556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 10762865 - 10762779
Alignment:
Q  149 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccact 234  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||    
T  10762865 cagggccggccctgaggggatgcaaacagctcaacagagctgggcttccctcaatcatgggcctcaattttttttttaatacccact 10762779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 4505695 - 4505744
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  ||||||||||||||||| | ||||||||||    
T  4505695 ggggtgcaaacagctcaaacgagctgggcctccctcaatgatgggcctca 4505744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 3952915 - 3952966
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 215  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  3952915 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 3952966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 3155019 - 3155068
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  3155019 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 3155068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 5952986 - 5952949
Alignment:
Q  158 ccctgaggggtgcaaacagctcaacagagctgggcctc 195  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  5952986 ccctgaggggtgcaaacagctcaaacgagctgggcctc 5952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 6964808 - 6964857
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  6964808 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 6964857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 53020 - 52968
Alignment:
Q  145 tgatcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctcc 196  Q
    |||||||| |||||||||||||| ||||| |||||| || |||||||||||||    
T  53020 tgatcagggccgaccctgagggggtgcaagcagctctactgagctgggcctcc 52968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 24969258 - 24969332
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  24969258 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccactagta 24969332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 40089328 - 40089413
Alignment:
Q  152 gcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  40089328 gcccggccatgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatacccactagta 40089413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 16844843 - 16844921
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttt-aatacccactagtatta 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  16844843 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaaatacccactagtatta 16844921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 32128408 - 32128485
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||    
T  32128408 ggggtgcaaacagctcaacagagctgggcctccctcagttatggacctcaattttttttttaatacccactagtatta 32128485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 54083541 - 54083454
Alignment:
Q  152 gcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    ||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  54083541 gcccgtccctgagggggtgcaaacagctcaatagagctgggcatccctcagtcatgggcctcaattttttttttaatacccactagta 54083454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 2791044 - 2790947
Alignment:
Q  145 tgatcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||| || ||||||||||||||    
T  2791044 tgatcaggcccgactctgagggggtgcaaacagctcaacagagctgggtctccctcagtcatggacgtcaatttttttttgaaaacccactagtatta 2790947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 38352554 - 38352489
Alignment:
Q  149 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38352554 caggcccggccctgaggggtgcaaacagctcaacagagctgggcctcccttagtcatgggcctcaa 38352489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 16882675 - 16882601
Alignment:
Q  166 ggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||| ||||||||||||||||||||||    
T  16882675 ggtgcaaacagctcaacagagctgggcttcccttagtcatgagcctcaa-tttttttttaatacccactagtatta 16882601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 37777509 - 37777434
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-gtttgtttttaatacccactagta 238  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||  ||| |||||||||||||||||||    
T  37777509 ggggtgcaaacagctcaacagagctggacctccctcaatcatgggcctcaatttttttttttaatacccactagta 37777434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 19498313 - 19498402
Alignment:
Q  149 caggcccgaccctga-ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||| |||||| |||||||||| |||||||||| |||||||||||| || ||||||||||||| ||| |||||||||||||||||||    
T  19498313 caggcccggccctgacggggtgcaaatagctcaacagtgctgggcctcccccaatcatgggcctcaa-tttttttttaatacccactagta 19498402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 34027407 - 34027471
Alignment:
Q  167 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaataccc 231  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||    
T  34027407 gtgcaaactgctcaacagagctgggtctccctcagtcatgggcctcaattttttttttaataccc 34027471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 35463958 - 35464016
Alignment:
Q  165 gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttt 223  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||| ||||    
T  35463958 gggtgcaaacagctcaacagagctgggcctcccccagccatgggcatcaattttttttt 35464016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 54779441 - 54779490
Alignment:
Q  149 caggcccgaccctgaggg-gtgcaaacagctcaacagagctgggcctccc 197  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  54779441 caggcccggccctgagggagtgcaaacagctcaaccgagctgggcctccc 54779490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 38209894 - 38209842
Alignment:
Q  161 tgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    |||||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  38209894 tgaggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 38209842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 1105447 - 1105498
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 215  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  1105447 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 1105498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 10431492 - 10431421
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccacta 235  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||   | ||||| ||||||||||    
T  10431492 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaaaaatattttttatacccacta 10431421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 35780606 - 35780532
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtat 239  Q
    ||||||||||||||||||| |||||||||||||| ||   || |||||||| ||| ||||||||| ||| ||||||    
T  35780606 ggggtgcaaacagctcaaccgagctgggcctcccccacggataggcctcaa-tttttttttaatatccagtagtat 35780532  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 9579525 - 9579483
Alignment:
Q  158 ccctgaggggtgcaaacagctcaacagagctgggcctccctca 200  Q
    |||||||| |||||||||||||||  |||||||||||||||||    
T  9579525 ccctgaggcgtgcaaacagctcaaacgagctgggcctccctca 9579483  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 9585220 - 9585178
Alignment:
Q  158 ccctgaggggtgcaaacagctcaacagagctgggcctccctca 200  Q
    |||||||| |||||||||||||||  |||||||||||||||||    
T  9585220 ccctgaggcgtgcaaacagctcaaacgagctgggcctccctca 9585178  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 45560754 - 45560704
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa 214  Q
    ||||||||||||||||||  |||||||||||||||||   |||||||||||    
T  45560754 ggggtgcaaacagctcaaacgagctgggcctccctcaaagatgggcctcaa 45560704  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 55255096 - 55255145
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  55255096 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 55255145  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 5129033 - 5128997
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctca 200  Q
    ||||||||||||||||||  |||||||||||||||||    
T  5129033 ggggtgcaaacagctcaaacgagctgggcctccctca 5128997  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 17679233 - 17679293
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttt 224  Q
    ||||||||||||||||||  |||||| ||||||||||   ||||||||||| ||| |||||    
T  17679233 ggggtgcaaacagctcaaacgagctgagcctccctcaaggatgggcctcaattttattttt 17679293  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 47127997 - 47128057
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgttttt 224  Q
    |||||||||||||| |||  |||||||||||||||||   ||||||||||| ||| |||||    
T  47127997 ggggtgcaaacagcccaaacgagctgggcctccctcaaggatgggcctcaatttttttttt 47128057  T

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Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 16199076 - 16199005
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccacta 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  16199076 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaattttttttttaatacccacta 16199005  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 27923885 - 27923974
Alignment:
Q  149 caggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  27923885 caggcccgtccctgagggggtgcaaacagctcaacagagctggacctccctcagtcatgggcctcaa-tttttttttaatacccactagta 27923974  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 38869660 - 38869567
Alignment:
Q  148 tcaggcccgaccctgagggg-tgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    ||||||||| || ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  38869660 tcaggcccggccatgagggggtgcaaacagctcaacaaagctgggcctccctcagtcatgggcctcaaattt-tttttaatacccactagtatta 38869567  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 7670728 - 7670816
Alignment:
Q  149 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || || ||| ||||||| |||||||||||    
T  7670728 caggcccggccctgaggggtgcaaacagctcaacagagttgggcctccctcagtcatgggtcttaa-tttttttttaacacccactagta 7670816  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 9364113 - 9364183
Alignment:
Q  167 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||    
T  9364113 gtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaa-tttttttttaatatccactagta 9364183  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 238
Target Start/End: Complemental strand, 40389831 - 40389743
Alignment:
Q  149 caggcccgaccctgag-gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||  || |||||||||||||||||||    
T  40389831 caggcccggccctgagcgggtgcaaacagctcaacagacctgggcctccctcagtcatggacctcaa--ttttttttaatacccactagta 40389743  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 16799606 - 16799530
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagtatta 241  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| ||||||| ||||| ||||||||    
T  16799606 ggggtgcaaacagctcaatagagctaggcctccctcagtcatgggcctcaa-tttttttttaacacccattagtatta 16799530  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 15480279 - 15480228
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 215  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  15480279 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 15480228  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 19523109 - 19523160
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaag 215  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||    
T  19523109 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctcaag 19523160  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 34756664 - 34756615
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||    
T  34756664 ggggtgcaaacagctcaaacgagctgggcctccctcaaggatgggcctca 34756615  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 22987517 - 22987481
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctca 200  Q
    ||||||||||||||||||  |||||||||||||||||    
T  22987517 ggggtgcaaacagctcaaacgagctgggcctccctca 22987481  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 30853282 - 30853350
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaataccca 232  Q
    ||||||||||||||||||  ||||||||||||| |||   |||| |||||| ||| ||||| |||||||    
T  30853282 ggggtgcaaacagctcaaacgagctgggcctccttcaaggatggacctcaatttttttttttataccca 30853350  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 31881640 - 31881604
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctca 200  Q
    ||||||||||||||||||  |||||||||||||||||    
T  31881640 ggggtgcaaacagctcaaacgagctgggcctccctca 31881604  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 34855925 - 34855989
Alignment:
Q  149 caggcccgaccctgaggggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctca 213  Q
    |||||||| |||| |||| ||||||||||| ||  ||||||||||||||| ||  ||||||||||    
T  34855925 caggcccggcccttagggatgcaaacagctaaatggagctgggcctccctaaggtatgggcctca 34855989  T

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Target: scaffold0027 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 4147 - 4238
Alignment:
Q  147 atcaggcccgaccctgag-gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttttaatacccactagta 238  Q
    |||||| ||| ||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||    
T  4147 atcagggccggccctgagagggtgcaaacagctcaacagagctgggcctcctccagtcatgggcctcaa-tttttttttaatacccactagta 4238  T

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Target: scaffold0039 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 106379 - 106454
Alignment:
Q  149 caggcccgaccctgag-gggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaagtttgtttt 223  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  106379 caggcccggccctgagagggtgcaaacagctcaacagagctgggcctccctcagtcatgggcctcaaatttttttt 106454  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 1027 - 1063
Alignment:
Q  164 ggggtgcaaacagctcaacagagctgggcctccctca 200  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1027 ggggtgcaaacagctcaaacgagctgggcctccctca 1063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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