View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_low_29 (Length: 238)
Name: NF19139_low_29
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6456133 - 6455913
Alignment:
| Q |
1 |
cgtccaactcttagtagaagatttattccggagcaaggaactccggaatatgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6456133 |
cgtccaactcttagtagaagatttattccggagcaaggaactccggagtatgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacac |
6456034 |
T |
|
| Q |
101 |
caaagtttcagaccctcattgatctttctgtgattgagatattgtcaagacatgcttctgatgaggtgtatctcggagagaggaatgacaagttttggac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6456033 |
caaagtttcagaccctcattgatctttctgtgattgagatattgtcaagacatgcttctgatgaggtgtatctcggagagaggaatgacaagttttggac |
6455934 |
T |
|
| Q |
201 |
atctgatacaagggcagttca |
221 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
6455933 |
atctgatacaagggcagttca |
6455913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6449666 - 6449446
Alignment:
| Q |
1 |
cgtccaactcttagtagaagatttattccggagcaaggaactccggaatatgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacac |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6449666 |
cgtccaacaattagtagaagatttattccggagccaggaactccggaatacgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacac |
6449567 |
T |
|
| Q |
101 |
caaagtttcagaccctcattgatctttctgtgattgagatattgtcaagacatgcttctgatgaggtgtatctcggagagaggaatgacaagttttggac |
200 |
Q |
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|||||| ||| ||||| |||||||||||||||| |||||||||||||||||||| || ||||| |||||||| ||||||| ||| ||||||||||||| |
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| T |
6449566 |
caaagtatcaaacccttgttgatctttctgtgatcgagatattgtcaagacatgcgtccgatgaagtgtatcttggagagaataataacaagttttggac |
6449467 |
T |
|
| Q |
201 |
atctgatacaagggcagttca |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
6449466 |
atctgatacaagggcagttca |
6449446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 165
Target Start/End: Complemental strand, 6262058 - 6261963
Alignment:
| Q |
70 |
cctcaaaaggcgtatttgagaactattacaccaaagtttcagaccctcattgatctttctgtgattgagatattgtcaagacatgcttctgatgag |
165 |
Q |
| |
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||||| ||||| || |||||||| |||||||| |||||||| || || ||||||||||| || || || |||||||| || ||||||||||||||| |
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| T |
6262058 |
cctcagaaggcctacttgagaacaattacaccgaagtttcaaacgctgattgatctttcagtcatagaaatattgtcgaggcatgcttctgatgag |
6261963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 9606350 - 9606561
Alignment:
| Q |
1 |
cgtccaactcttagtagaagatttattccggagcaaggaactccggaatatgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacac |
100 |
Q |
| |
|
|||||||| |||||| |||||| || |||||| ||||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
9606350 |
cgtccaacacttagtcgaagatggatcccggagaaaggaactccgaattatgatgagatggtgaaaaaccctcaaaaggcatatttgagaacaattacac |
9606449 |
T |
|
| Q |
101 |
caaagtttcagaccctcattgatctttctgtgattgagatattgtcaagacatgcttctgatgaggtgtatctcggagagaggaatgacaagttttggac |
200 |
Q |
| |
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|||| | ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | || || ||||||||| ||| ||||||||||| |
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| T |
9606450 |
caaaatatcaaaccctaattgatctttctgtgattgagatattgtctagacatgcttctgatgaaatctaccttggagagagggatgttaagttttggac |
9606549 |
T |
|
| Q |
201 |
atctgatacaag |
212 |
Q |
| |
|
||| ||| |||| |
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|
| T |
9606550 |
atccgattcaag |
9606561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 9590736 - 9590805
Alignment:
| Q |
35 |
aaggaactccggaatatgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacaccaaa |
104 |
Q |
| |
|
||||||||| |||||||| || |||||||||| ||| |||||| | ||||||||||| ||||| ||||| |
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|
| T |
9590736 |
aaggaactcttgaatatgaagaaatggtgaaaaatccccaaaagccatatttgagaacaattacgccaaa |
9590805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 42689706 - 42689866
Alignment:
| Q |
4 |
ccaactcttagtagaagatttattccggagcaaggaactccggaatatgatgagatggtgaaaagtcctcaaaaggcgtatttgagaactattacaccaa |
103 |
Q |
| |
|
|||||| | ||||||||||| |||| ||| |||||||| | |||||||||| |||||||| |||||||||||||| || |||||||| || || || | |
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| T |
42689706 |
ccaactatcagtagaagattacttcctgaggaaggaactgcacaatatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccga |
42689805 |
T |
|
| Q |
104 |
agtttcagaccctcattgatctttctgtgattgagatattgtcaagacatgcttctgatga |
164 |
Q |
| |
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|||||||||| || ||||| ||||| ||||| || |||||||||||||||||||||||||| |
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| T |
42689806 |
agtttcagactcttattgacctttcagtgatagaaatattgtcaagacatgcttctgatga |
42689866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 42692082 - 42691964
Alignment:
| Q |
64 |
aaaagtcctcaaaaggcgtatttgagaactattacaccaaagtttcagaccctcattgatctttctgtgattgagatattgtcaagacatgcttctgatg |
163 |
Q |
| |
|
|||||||| |||||||| || |||| || |||||||| ||||||||||| || || || ||||| || || || ||||||||||| || |||||||||| |
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| T |
42692082 |
aaaagtccacaaaaggcatacttgaagacaattacaccgaagtttcagacgcttatcgacctttccgttatagaaatattgtcaaggcacgcttctgatg |
42691983 |
T |
|
| Q |
164 |
aggtgtatctcggagagag |
182 |
Q |
| |
|
| ||||| || |||||||| |
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|
| T |
42691982 |
aagtgtaccttggagagag |
42691964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 36746051 - 36746142
Alignment:
| Q |
73 |
caaaaggcgtatttgagaactattacaccaaagtttcagaccctcattgatctttctgtgattgagatattgtcaagacatgcttctgatga |
164 |
Q |
| |
|
|||| ||| ||||||||||| || ||||||||| || | |||||||| ||| | ||||| |||||||||||||| |||||||||||||| |
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|
| T |
36746051 |
caaagggcttatttgagaacaatcacaccaaagaccgaggctctcattgaccttacggtgatagagatattgtcaaggcatgcttctgatga |
36746142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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