View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_low_31 (Length: 216)
Name: NF19139_low_31
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 43411248 - 43411446
Alignment:
| Q |
1 |
ataagaattacattaacnnnnnnncgcttttcaatgacacaactttcatctcaaatgaatttctataactcaagttatgcacgttaaataatgttgctat |
100 |
Q |
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| T |
43411248 |
ataagaattacattaactttttttcgcttttcaatgacacaactttcatctcaaatgaatttctataactcaagttatgcacgataaataatgttgctat |
43411347 |
T |
|
| Q |
101 |
tcttgct-nnnnnnnntccattatgatatgcctcaaacctatatatacaggagtttgaccatgctaggggtcgaatttggcttgccataaatggttgtct |
199 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43411348 |
tcttgctaaaaaaatatccattatgatatgcctcaaacc--tatatacaggagtttgaccatgctaggggtcgaatttggcttgccataaatggttgtct |
43411445 |
T |
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