View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19139_low_4 (Length: 519)
Name: NF19139_low_4
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_low_4 |
 | |
|
| [»] scaffold0003 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0003 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 196 - 506
Target Start/End: Complemental strand, 15163 - 14853
Alignment:
| Q |
196 |
agggacttcagacaaaatatttctaatttgtaatgtctttaaatatttattgaaacttactaatatttatttcatgtcttccaaaacttccatgaggtgt |
295 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15163 |
agggacttgagacaaaatatttctaacttgtaatgtctttaaatatttattgaaacttcctaatatttattccatgtcttccaaaacttccatgaggtgt |
15064 |
T |
|
| Q |
296 |
cttcctaaccgaattacatcatttgccaattaaagattcaaaatacctataaaattatctagtttatagaagaaatagaattacatgactttattcaaaa |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15063 |
cttcctaaccgaattacatcatttgccaattaaagattcaaaatacctatgaaattatctagtttatagaagaaatagaattacatgactttattcaaaa |
14964 |
T |
|
| Q |
396 |
caatacctaatgtcccttaaactatgagaaacttctacaaaactcatccattatgatacaaattgtccactaaccgattaaaaaacttatggaatatcca |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14963 |
caatacctaatgtcccttaaactatgagaaacttctacaaaactcatccattatgatacaaattgtccactaaccgattaaaaaacttatggaatatcca |
14864 |
T |
|
| Q |
496 |
acacaaattat |
506 |
Q |
| |
|
||||||||||| |
|
|
| T |
14863 |
acacaaattat |
14853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 196 - 506
Target Start/End: Complemental strand, 29309 - 28999
Alignment:
| Q |
196 |
agggacttcagacaaaatatttctaatttgtaatgtctttaaatatttattgaaacttactaatatttatttcatgtcttccaaaacttccatgaggtgt |
295 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29309 |
agggacttgagacaaaatatttctaacttgtaatgtctttaaatatttattgaaacttcctaatatttattccatgtcttccaaaacttccatgaggtgt |
29210 |
T |
|
| Q |
296 |
cttcctaaccgaattacatcatttgccaattaaagattcaaaatacctataaaattatctagtttatagaagaaatagaattacatgactttattcaaaa |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29209 |
cttcctaaccgaattacatcatttgccaattaaagattcaaaatacctatgaaattatctagtttatagaagaaatagaattacatgactttattcaaaa |
29110 |
T |
|
| Q |
396 |
caatacctaatgtcccttaaactatgagaaacttctacaaaactcatccattatgatacaaattgtccactaaccgattaaaaaacttatggaatatcca |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29109 |
caatacctaatgtcccttaaactatgagaaacttctacaaaactcatccattatgatacaaattgtccactaaccgattaaaaaacttatggaatatcca |
29010 |
T |
|
| Q |
496 |
acacaaattat |
506 |
Q |
| |
|
||||||||||| |
|
|
| T |
29009 |
acacaaattat |
28999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 15347 - 15218
Alignment:
| Q |
11 |
cagagaatgtgggatacgtgaggctatgttcggggcacgtggtatctgacagagagaaatcgtccctatccaatgtgcatgggacacgtgagataaatgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
15347 |
cagagaatgtgggatacgtgaggctatgtttggggcacgtggcatctgacagagagaaaacgtccctatccaatgcgcatggggcgcgtgagataaatgc |
15248 |
T |
|
| Q |
111 |
aaggcacatacccttagccctaggtgtgga |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15247 |
aaggcacatacccttagccctaggtgtgga |
15218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 29493 - 29364
Alignment:
| Q |
11 |
cagagaatgtgggatacgtgaggctatgttcggggcacgtggtatctgacagagagaaatcgtccctatccaatgtgcatgggacacgtgagataaatgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
29493 |
cagagaatgtgggatacgtgaggctatgtttggggcacgtggcatctgacagagagaaaacgtccctatccaatgcgcatggggcgcgtgagataaatgc |
29394 |
T |
|
| Q |
111 |
aaggcacatacccttagccctaggtgtgga |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
29393 |
aaggcacatacccttagccctaggtgtgga |
29364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 196 - 506
Target Start/End: Complemental strand, 16426450 - 16426140
Alignment:
| Q |
196 |
agggacttcagacaaaatatttctaatttgtaatgtctttaaatatttattgaaacttactaatatttatttcatgtcttccaaaacttccatgaggtgt |
295 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16426450 |
agggacttgagacaaaatatttctaacttgtaatgtctttaaatatttattgaaacttcctaatatttattccatgtcttccaaaacttccatgaggtgt |
16426351 |
T |
|
| Q |
296 |
cttcctaaccgaattacatcatttgccaattaaagattcaaaatacctataaaattatctagtttatagaagaaatagaattacatgactttattcaaaa |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16426350 |
cttcctaaccgaattacatcatttgccaattaaagattcaaaatacctatgaaattatctagtttatagaagaaatagaattacatgactttattcaaaa |
16426251 |
T |
|
| Q |
396 |
caatacctaatgtcccttaaactatgagaaacttctacaaaactcatccattatgatacaaattgtccactaaccgattaaaaaacttatggaatatcca |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16426250 |
caatacctaatgtcccttaaactatgagaaacttctacaaaactcatccattatgatacaaattgtccactaaccgattaaaaaacttatggaatatcca |
16426151 |
T |
|
| Q |
496 |
acacaaattat |
506 |
Q |
| |
|
||||||||||| |
|
|
| T |
16426150 |
acacaaattat |
16426140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 16426634 - 16426505
Alignment:
| Q |
11 |
cagagaatgtgggatacgtgaggctatgttcggggcacgtggtatctgacagagagaaatcgtccctatccaatgtgcatgggacacgtgagataaatgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
16426634 |
cagagaatgtgggatacgtgaggctatgtttggggcacgtggcatctgacagagagaaaacgtccctatccaatgcgcatggggcgcgtgagataaatgc |
16426535 |
T |
|
| Q |
111 |
aaggcacatacccttagccctaggtgtgga |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
16426534 |
aaggcacatacccttagccctaggtgtgga |
16426505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 206 - 362
Target Start/End: Original strand, 11564700 - 11564856
Alignment:
| Q |
206 |
gacaaaatatttctaatttgtaatgtctttaaatatttattgaaacttactaatatttatttcatgtcttccaaaacttccatgaggtgtcttcctaacc |
305 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||| |||||||||| ||||||||||| ||| ||| || |||||||| || |||||||||||||||| || |
|
|
| T |
11564700 |
gacaaaaaatttctaacttgtaatgtcttcaaatctttattgaaatttactaatattcattccatatcgtccaaaacctctatgaggtgtcttcctagcc |
11564799 |
T |
|
| Q |
306 |
gaattacatcatttgccaattaaagattcaaaatacctataaaattatctagtttat |
362 |
Q |
| |
|
| |||||||||||||||||| ||||| |||||| |||||| ||||| |||||||||| |
|
|
| T |
11564800 |
gtattacatcatttgccaataaaagactcaaaacacctatgaaattgtctagtttat |
11564856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 430
Target Start/End: Original strand, 21546437 - 21546513
Alignment:
| Q |
355 |
tagtttatagaagaaatagaattacatgactttat-tcaaaacaatacctaatgtcccttaaactatgagaaacttc |
430 |
Q |
| |
|
||||||| |||||| |||||||||||||||| || | |||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
21546437 |
tagtttagggaagaactagaattacatgacttgatatgaaaacattacaaaatgtcccttaaaccatgagaaacttc |
21546513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 336
Target Start/End: Complemental strand, 23015915 - 23015848
Alignment:
| Q |
269 |
atgtcttccaaaacttccatgaggtgtcttcctaaccgaattacatcatttgccaattaaagattcaa |
336 |
Q |
| |
|
||||||| |||||||||||||||| ||||| || ||||||||||| ||||| |||| ||||| |||| |
|
|
| T |
23015915 |
atgtcttgcaaaacttccatgaggcgtcttgcttgccgaattacataatttgtcaataaaagactcaa |
23015848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 440
Target Start/End: Complemental strand, 17617553 - 17617374
Alignment:
| Q |
261 |
tttatttcatgtcttccaaaacttccatgaggtgtcttcctaaccgaattacatcatttgccaattaaagattcaaaatacctataaaattatctagttt |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||| |||| ||||| |||||| |||||| ||||| | | |||| |
|
|
| T |
17617553 |
tttatttcatgtcttccaaaacttccatgagacgtcttgcttgccgaattacatggtttatcaataaaagactcaaaaaacctatgaaattgtatggttt |
17617454 |
T |
|
| Q |
361 |
atagaagaaatagaattacatgactttattcaaaacaatacctaatgtcccttaaactatgagaaacttctacaaaactc |
440 |
Q |
| |
|
| |||||| | |||||||||||| ||| |||||||||| || | ||||||||| |||||||| |||| ||||||| |
|
|
| T |
17617453 |
aggaaagaaacaaaattacatgactcaattgaaaacaatactaaaaggcccttaaaccatgagaaaattctctaaaactc |
17617374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 298
Target Start/End: Complemental strand, 15929928 - 15929898
Alignment:
| Q |
268 |
catgtcttccaaaacttccatgaggtgtctt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
15929928 |
catgtcttccaaaacttccatgaggtgtctt |
15929898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 298
Target Start/End: Complemental strand, 15182978 - 15182949
Alignment:
| Q |
269 |
atgtcttccaaaacttccatgaggtgtctt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15182978 |
atgtcttccaaaacttccatgaggtgtctt |
15182949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 431
Target Start/End: Original strand, 11222203 - 11222307
Alignment:
| Q |
327 |
aaagattcaaaatacctataaaattatctagtttatagaagaaatagaattacatgactttattcaaaacaatacctaatgtcccttaaactatgagaaa |
426 |
Q |
| |
|
||||| |||||| |||||| ||||| ||||||||| ||||||||||||||||||||||| ||| |||||| ||| ||||| |||||||| ||| | || |
|
|
| T |
11222203 |
aaagactcaaaagacctatgaaattgtctagtttagagaagaaatagaattacatgactcgattgaaaacattacagaatgttccttaaaccatgggtaa |
11222302 |
T |
|
| Q |
427 |
cttct |
431 |
Q |
| |
|
||||| |
|
|
| T |
11222303 |
cttct |
11222307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 442
Target Start/End: Original strand, 29529373 - 29529595
Alignment:
| Q |
220 |
aatttgtaatgtctttaaatatttattgaaacttactaatatttatttcatgtcttccaaaacttccatgaggtgtcttcctaaccgaattacatcattt |
319 |
Q |
| |
|
||||||||||||||| ||| |||||||| ||| |||| || ||||||||||||||||||||| |||| | | ||| || ||||||||||| |||| |
|
|
| T |
29529373 |
aatttgtaatgtcttcaaagccttattgaaccttgataatcttcatttcatgtcttccaaaactttcatgggcttccttgctttccgaattacatgattt |
29529472 |
T |
|
| Q |
320 |
gccaattaaagattcaaaatacctataaaattatctagtttatagaagaaatagaattacatgactttattcaaaacaatacctaatgtcccttaaacta |
419 |
Q |
| |
|
|||| ||||| || ||| | ||| ||||| ||| ||||| ||||||| | |||||||||||| ||| |||||||| | ||| || ||||||| | |
|
|
| T |
29529473 |
ttcaataaaagactcgaaacatgtatgaaattgtctggtttagggaagaaacataattacatgactcaattaaaaacaatgcaaaatatctcttaaacca |
29529572 |
T |
|
| Q |
420 |
tgagaaacttctacaaaactcat |
442 |
Q |
| |
|
||| ||||||||| |||||||| |
|
|
| T |
29529573 |
tgaaaaacttctatcaaactcat |
29529595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 256 - 422
Target Start/End: Complemental strand, 3792327 - 3792162
Alignment:
| Q |
256 |
taatatttatttcatgtcttccaaaacttccatgaggtgtcttcctaaccgaattacatcatttgccaattaaagattcaaaatacctataaaattatct |
355 |
Q |
| |
|
||||||||||||||| |||| ||||||||| | |||||||||| || | ||| | ||| ||||| |||| ||||| ||||| |||||| ||||||| | |
|
|
| T |
3792327 |
taatatttatttcatatctt-caaaacttctaagaggtgtctttcttgctgaagtgcatgatttgtcaataaaagactcaaaccacctatgaaattatat |
3792229 |
T |
|
| Q |
356 |
agtttatagaagaaatagaattacatgactttattcaaaacaatacctaatgtcccttaaactatga |
422 |
Q |
| |
|
|||||| ||||||| | ||||| |||||| ||| ||||| |||| |||||| ||||||| |||| |
|
|
| T |
3792228 |
agtttagggaagaaacataattatatgactcaatttaaaacgatacaaaatgtctcttaaaccatga |
3792162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 361
Target Start/End: Complemental strand, 3830134 - 3830028
Alignment:
| Q |
255 |
ctaatatttatttcatgtcttccaaaacttccatgaggtgtcttcctaaccgaattacatcatttgccaattaaagattcaaaatacctataaaattatc |
354 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| | || ||||||| || | || | ||| ||||| |||| ||||| ||||| |||||||||||||| |
|
|
| T |
3830134 |
ctaatatttatttcatatcttccaaatcttctaagaagtgtctttcttgctgaggtgcatgatttgtcaataaaagactcaaaccacctataaaattata |
3830035 |
T |
|
| Q |
355 |
tagttta |
361 |
Q |
| |
|
||||||| |
|
|
| T |
3830034 |
tagttta |
3830028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 269 - 361
Target Start/End: Complemental strand, 12878167 - 12878074
Alignment:
| Q |
269 |
atgtcttccaaaacttccatgaggtgtcttcctaaccgaattacatcatttgccaattaaa-gattcaaaatacctataaaattatctagttta |
361 |
Q |
| |
|
|||||||| |||||||||||||| | |||| || | ||||||||| |||| |||| ||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
12878167 |
atgtcttcaaaaacttccatgagatatcttgcttgcggaattacataatttagcaataaaaagattcaaaacacctataaaattgtctagttta |
12878074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 382
Target Start/End: Original strand, 12880917 - 12881036
Alignment:
| Q |
264 |
atttcatgtcttccaaaacttccatgaggtgtctt-cctaaccgaattacatcatttgccaattaaagattcaaaatacctataaaattatctagtttat |
362 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| | | ||||||||||| |||| || | ||||| |||| | |||||| ||| ||||| ||||| |
|
|
| T |
12880917 |
atttcatgtcttccaaaatttccatgaggtgtcttgctttgccgaattacatgatttttcactaaaagaatcaagacacctatgaaactatctggtttag |
12881016 |
T |
|
| Q |
363 |
agaagaaatagaattacatg |
382 |
Q |
| |
|
||| ||| | ||||||||| |
|
|
| T |
12881017 |
ggaataaacataattacatg |
12881036 |
T |
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