View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19139_low_5 (Length: 518)

Name: NF19139_low_5
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19139_low_5
NF19139_low_5
[»] chr5 (3 HSPs)
chr5 (13-504)||(37023110-37023601)
chr5 (13-128)||(12842728-12842843)
chr5 (13-128)||(24092269-24092385)
[»] scaffold0015 (2 HSPs)
scaffold0015 (13-128)||(29710-29825)
scaffold0015 (13-128)||(24394-24509)
[»] chr6 (4 HSPs)
chr6 (13-128)||(16772649-16772764)
chr6 (13-128)||(16777985-16778100)
chr6 (13-128)||(32708006-32708121)
chr6 (42-129)||(32703637-32703724)
[»] chr1 (4 HSPs)
chr1 (13-128)||(42375121-42375236)
chr1 (13-128)||(2797188-2797303)
chr1 (13-128)||(2790758-2790873)
chr1 (13-130)||(21010589-21010707)
[»] chr8 (4 HSPs)
chr8 (13-128)||(91581-91696)
chr8 (13-128)||(29010965-29011080)
chr8 (13-129)||(86263-86379)
chr8 (13-129)||(19802734-19802850)
[»] chr3 (5 HSPs)
chr3 (13-127)||(13719338-13719452)
chr3 (13-128)||(6806767-6806883)
chr3 (13-128)||(13723235-13723350)
chr3 (13-128)||(4099570-4099686)
chr3 (13-103)||(26137133-26137223)
[»] chr7 (4 HSPs)
chr7 (13-128)||(11716384-11716499)
chr7 (13-128)||(11708868-11708983)
chr7 (13-128)||(13160334-13160450)
chr7 (28-128)||(13166801-13166902)
[»] chr4 (2 HSPs)
chr4 (13-128)||(14026808-14026925)
chr4 (85-133)||(14023862-14023910)
[»] chr2 (3 HSPs)
chr2 (19-103)||(37758843-37758929)
chr2 (13-53)||(20925574-20925614)
chr2 (13-95)||(36314772-36314855)


Alignment Details
Target: chr5 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 13 - 504
Target Start/End: Original strand, 37023110 - 37023601
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37023110 tcaaatatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 37023209  T
Q  113 gtcttactctgtatcaagaagttggcatatcaatttgtgagtaaagacagacttgatcatatgcacagagaaacctgaatgcattaatgaaccatttatg 212  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37023210 gtcttactctgtatcaagaagttggcatatcgatttgtgagtaaagacagacttgatcatatgcacagagaaacctgaatgcattaatgaaccatttatg 37023309  T
Q  213 tagatcccctttatatgctttgtatactattggtagatattcacttttaatgtgtttcattggaccaccactactccagtgccattatccctcatcaagc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37023310 tagatcccctttatatgctttgtatactattggtagatattcacttttaatgtg-ttcattggaccaccactactccagtgccattatccctcatcaagc 37023408  T
Q  313 acctatactttcatgcacatttagatctcaaaacataaaaactttagtcccagcttggacaacctatacctataagatctgatcaattgcaacaaaacaa 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37023409 acctatactttcatgcacatttagatctcaaaacataaaaactttagtcccagcttggacaacctatacctataagatttgatcaattgcaacaaaacaa 37023508  T
Q  413 aacctcattgcattagtgaaccacttattaatgtcccc-gttagctttgtactattggtagatgttcatttgaatgtcttgtccatttgtacc 504  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37023509 aacctcattgcattagtgaaccacttattaatgtcccctgttagctttgtactattggtagatgttcatttgaatgtcttgtccatttgtacc 37023601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 12842843 - 12842728
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||     
T  12842843 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattaat 12842744  T
Q  113 gtcttactctgtatca 128  Q
    ||||||||||||||||    
T  12842743 gtcttactctgtatca 12842728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 24092269 - 24092385
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcat-atagggtggtggctgcaaaatctatgccatattaa 111  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||| | | | |||||||||||  |||||||||||||||||| ||||||||||| |||    
T  24092269 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtgaactaggaaagctagcatggtagggtggtggctgcaaagtctatgccatagtaa 24092368  T
Q  112 agtcttactctgtatca 128  Q
     ||||| |||| |||||    
T  24092369 tgtcttgctctatatca 24092385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 29710 - 29825
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  29710 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattaaa 29809  T
Q  113 gtcttactctgtatca 128  Q
    ||||||||||||||||    
T  29810 gtcttactctgtatca 29825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 24394 - 24509
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  24394 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgcgatattaaa 24493  T
Q  113 gtcttactctgtatca 128  Q
    ||||||||||||||||    
T  24494 gtcttactctgtatca 24509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 16772649 - 16772764
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  16772649 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattaaa 16772748  T
Q  113 gtcttactctgtatca 128  Q
    ||||||||||||||||    
T  16772749 gtcttactctgtatca 16772764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 16777985 - 16778100
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  16777985 tcaaatatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattaaa 16778084  T
Q  113 gtcttactctgtatca 128  Q
    || |||||||||||||    
T  16778085 gttttactctgtatca 16778100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 32708121 - 32708006
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||     
T  32708121 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattaat 32708022  T
Q  113 gtcttactctgtatca 128  Q
    ||||||||||||||||    
T  32708021 gtcttactctgtatca 32708006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 32703724 - 32703637
Alignment:
Q  42 tcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaagtcttactctgtatcaa 129  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||  |||||||||| ||||||    
T  32703724 tcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattagtgtcttactctatatcaa 32703637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 42375236 - 42375121
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  42375236 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattaaa 42375137  T
Q  113 gtcttactctgtatca 128  Q
    ||||||||||||||||    
T  42375136 gtcttactctgtatca 42375121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 2797188 - 2797303
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||| ||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||     
T  2797188 tcaaacatggtggcttattggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattaat 2797287  T
Q  113 gtcttactctgtatca 128  Q
    ||||||||||||||||    
T  2797288 gtcttactctgtatca 2797303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 2790758 - 2790873
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||     
T  2790758 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtgaaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattaat 2790857  T
Q  113 gtcttactctgtatca 128  Q
    |||||||| |||||||    
T  2790858 gtcttactttgtatca 2790873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 21010589 - 21010707
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcat-atagggtggtggctgcaaaatctatgccatattaa 111  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||| ||||| |||||||||||  |||||||||| ||||||| |||||||||||| ||    
T  21010589 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtgaaattggaaagctagcatggtagggtggtgactgcaaagtctatgccatatgaa 21010688  T
Q  112 agtcttactctgtatcaag 130  Q
     ||||| ||||||||||||    
T  21010689 tgtctttctctgtatcaag 21010707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 91696 - 91581
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||     
T  91696 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattaat 91597  T
Q  113 gtcttactctgtatca 128  Q
    ||||||||||||||||    
T  91596 gtcttactctgtatca 91581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 29010965 - 29011080
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| || ||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  29010965 tcaaacatggtggcttgttggccttattgtcgatagtagggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattaaa 29011064  T
Q  113 gtcttactctgtatca 128  Q
    ||||||||||||||||    
T  29011065 gtcttactctgtatca 29011080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 86379 - 86263
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||     
T  86379 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtagctgcaaagtctatgccatattaat 86280  T
Q  113 gtcttactctgtatcaa 129  Q
    |||||||||||||||||    
T  86279 gtcttactctgtatcaa 86263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 19802850 - 19802734
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||     
T  19802850 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatatagggtggtggctgaaaactctatgccatattaat 19802751  T
Q  113 gtcttactctgtatcaa 129  Q
    |||||||||||||||||    
T  19802750 gtcttactctgtatcaa 19802734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 13719338 - 13719452
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| ||||||||| || |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||     
T  13719338 tcaaacatggtggcttgttggccttattgtcaatagtaaggtggtggaattggaaagctagcatatagggtggtggctgcaaagtctatgccatattaat 13719437  T
Q  113 gtcttactctgtatc 127  Q
    |||||||||||||||    
T  13719438 gtcttactctgtatc 13719452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 6806767 - 6806883
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatata-gggtggtggctgcaaaatctatgccatattaa 111  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||    
T  6806767 tcaaacatggtggcttgttggccttattgtcaatagtagggtggtggaattggaaagctagcatataggggtggtggctgcaaagtctatgtcatattaa 6806866  T
Q  112 agtcttactctgtatca 128  Q
     ||||||||||||||||    
T  6806867 tgtcttactctgtatca 6806883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 13723235 - 13723350
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| | |||||||||| |||||||||| ||||||| |||||||||||||||||||||| |||||| ||||||||     
T  13723235 tcaaacatggtggcttgttggccttattgtaaatagtagggtggtggaattggaaagctaacatatagggtggtggctgcaaagtctatgtcatattaat 13723334  T
Q  113 gtcttactctgtatca 128  Q
    |||||||| |||||||    
T  13723335 gtcttactgtgtatca 13723350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 4099686 - 4099570
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcat-atagggtggtggctgcaaaatctatgccatattaa 111  Q
    ||||| |||||||||||||||||||||| |||||||||||| |||||||| | |||||||||||  ||||||||||||| |||| ||||||||||| |||    
T  4099686 tcaaaaatggtggcttgttggccttattgtcaatagtagggtggtggaataggaaagctagcatggtagggtggtggctacaaagtctatgccatagtaa 4099587  T
Q  112 agtcttactctgtatca 128  Q
     ||||| ||||||||||    
T  4099586 tgtcttgctctgtatca 4099570  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 26137133 - 26137223
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcat-atagggtggtggctgcaaaatctatgc 103  Q
    |||||||||||| ||||||||||||||| |||||||||||| |||||||| |    |||||||| ||||||||||||||||||| |||||||    
T  26137133 tcaaatatggtgacttgttggccttattgtcaatagtagggtggtggaatag-ggtgctagcatgatagggtggtggctgcaaagtctatgc 26137223  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 11716499 - 11716384
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||| |||||  |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||     
T  11716499 tcaaacatggtggcttgttggccttattgtcaataatagggttgtggaattgaaaagctagcatatagggtggtggctgcaaagtctatgtcatattaat 11716400  T
Q  113 gtcttactctgtatca 128  Q
    ||||||||||||||||    
T  11716399 gtcttactctgtatca 11716384  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 11708983 - 11708868
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatattaaa 112  Q
    ||||| |||||||||||||||||||||| |||||| |||||  ||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||     
T  11708983 tcaaacatggtggcttgttggccttattgtcaataatagggttgtggaattggaaagctagcatatagggtggtggctgcaaagtctatgctatattaat 11708884  T
Q  113 gtcttactctgtatca 128  Q
    ||||||||||||||||    
T  11708883 gtcttactctgtatca 11708868  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 13160450 - 13160334
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggggtggaattgaaaagctagcat-atagggtggtggctgcaaaatctatgccatattaa 111  Q
    ||||| |||| ||||||||||||||||| |||||||||||| |||||||||| |||||||||||  |||||||||||||||||| |||||||||||||||    
T  13160450 tcaaacatggaggcttgttggccttattttcaatagtagggtggtggaattggaaagctagcatggtagggtggtggctgcaaagtctatgccatattaa 13160351  T
Q  112 agtcttactctgtatca 128  Q
     ||||| |||| |||||    
T  13160350 tgtcttgctctatatca 13160334  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 13166902 - 13166801
Alignment:
Q  28 tgttggccttattatcaatagtaggggggtggaattgaaaagctagcata-tagggtggtggctgcaaaatctatgccatattaaagtcttactctgtat 126  Q
    ||||||||||||| |||||||||||| |||||||||| |||| ||||||  ||| |||||||||||||| ||||||||||||||| ||||| ||||||||    
T  13166902 tgttggccttattgtcaatagtagggtggtggaattggaaaggtagcatggtagcgtggtggctgcaaattctatgccatattaatgtcttgctctgtat 13166803  T
Q  127 ca 128  Q
    ||    
T  13166802 ca 13166801  T

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Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 14026925 - 14026808
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggggg--gtggaattgaaaagctagcatatagggtggtggctgcaaaatctatgccatatta 110  Q
    ||||| |||||||||||||||||||||| ||||||||||||||  ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||    
T  14026925 tcaaacatggtggcttgttggccttattgtcaatagtagggggtggtggaattggaaagttagcatatagggtggtggctgcaaagtctatgccatatta 14026826  T
Q  111 aagtcttactctgtatca 128  Q
    | ||||||||||||||||    
T  14026825 atgtcttactctgtatca 14026808  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 14023910 - 14023862
Alignment:
Q  85 gtggctgcaaaatctatgccatattaaagtcttactctgtatcaagaag 133  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  14023910 gtggctgcaaagtctatgccatattaatgtcttactctgtatcatgaag 14023862  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 37758929 - 37758843
Alignment:
Q  19 atggtggcttgttggccttattatcaatagtagggg-ggtggaattgaaaagctagcat-atagggtggtggctgcaaaatctatgc 103  Q
    |||||||||||||||| |||   ||||||||||||| ||||||||   ||||||||||| ||||| ||||||||||||| |||||||    
T  37758929 atggtggcttgttggcattaaagtcaatagtaggggtggtggaatgagaaagctagcatgataggttggtggctgcaaagtctatgc 37758843  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 20925574 - 20925614
Alignment:
Q  13 tcaaatatggtggcttgttggccttattatcaatagtaggg 53  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  20925574 tcaaacatggtggcttgttggccttattgtcaatagtaggg 20925614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 36314772 - 36314855
Alignment:
Q  13 tcaaatatggtggcttgttggccttatt-atcaatagtaggggggtggaattgaaaagctagcatatagggtggtggctgcaaa 95  Q
    ||||| ||||||| ||||||||||||||  |||||| ||||| |||||||| | |||||||||||    |||||||||||||||    
T  36314772 tcaaacatggtggtttgttggccttattgttcaatattagggtggtggaataggaaagctagcatggtaggtggtggctgcaaa 36314855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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