View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19139_low_7 (Length: 454)
Name: NF19139_low_7
Description: NF19139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19139_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 47689684 - 47689467
Alignment:
| Q |
11 |
atgaaggtgaggagaggagtatttgaagggaggaaaagggggacacgtggggtccactagagcaaaagatattggaaagtaaatagatcacattggctct |
110 |
Q |
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| T |
47689684 |
atgaaggtgaggagaggagtatttgaagggaggaaaagggggacacgtggggtccactagagcaaaagatattggaaagtaaatagatcacattggctct |
47689585 |
T |
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| Q |
111 |
caaaataaatgataactttttctaaaagtatgataattgatttatgcattattttgatctctaaatgtgtaaatgaatgtcattatagttgttgaaagta |
210 |
Q |
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| T |
47689584 |
caaaataaatgataactttttctaaaagtatgataattgatttatgcattattttgatctctaaatatgtaaatgaatgtcattatagttgttgaaagta |
47689485 |
T |
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| Q |
211 |
ttgaaattgaaaaatata |
228 |
Q |
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| T |
47689484 |
ttgaaattgaaacatata |
47689467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 286 - 420
Target Start/End: Complemental strand, 47689391 - 47689254
Alignment:
| Q |
286 |
tccatttatggatgtttttataactttgatatattcaagtattacattacaatagcatggtttgacacgttgaaagatcaaaataattatttaacaat-- |
383 |
Q |
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| T |
47689391 |
tccatttatggatgtttttataactttgatatattcaagtattacattacaatagcatggtttgacacgttgaaagatcaaaataattatttaacaataa |
47689292 |
T |
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| Q |
384 |
-aatagtaataaaaaagtaggctttagtcttgagatgt |
420 |
Q |
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| T |
47689291 |
taatagtaataaaaaagtaggctttagtcttgagatgt |
47689254 |
T |
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