View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_high_15 (Length: 434)
Name: NF1913_high_15
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 9061483 - 9061083
Alignment:
| Q |
19 |
acgtacgtgtaagtcagcttttggcgtgcacttgttatccccaacatgatgattatgtaactttttcaggaaatttgatatatcttgttaaaaagttgag |
118 |
Q |
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| T |
9061483 |
acgtacgtgtaagtcggcttttggcgtgcacttgttatccccaacatgatgattatgtaactttttcaagaaatttgatatatcttgttaaaaagttgag |
9061384 |
T |
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| Q |
119 |
gcaaattctacaattttgattaagaacgatcaattaaatcaaatgtttgcaaaatcaaaactcacttggaagtttactgtgatataatgttaagaagtgt |
218 |
Q |
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| T |
9061383 |
gcaaattctacaattttgattaagaacgatcaattaaatcaaatgtttgcaaaatcaaaactc---------tttattgtgatataatgttaagaagtgt |
9061293 |
T |
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| Q |
219 |
gtgaggcttatatatnnnnnnnnnnnnnnnnnngtagtgtctgaagattgaaccatacatattttatcattcacccttaaatattgggaagcaattaaaa |
318 |
Q |
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| T |
9061292 |
gtgaggcttatatataaaaaataaaataaaaaagtagtgtctgaagattggaccgtacatatttcatcattcacccttaaatattgggaagcaattaaaa |
9061193 |
T |
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| Q |
319 |
aataatgattaaatcaaagtacaattgcttcctaatatttaagggcaactatgaaata--taaatcgaagtaaattttatgcaacacacaattaaagaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||| |
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| T |
9061192 |
aataatgattaaatcaaagtacaattgcttcctaatatttaagggcaactatgacatatgtaaattgaagtaaattttatgcaacacgcaattaaagaat |
9061093 |
T |
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| Q |
417 |
gttttaccct |
426 |
Q |
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| T |
9061092 |
gttttaccct |
9061083 |
T |
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