View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_high_19 (Length: 378)
Name: NF1913_high_19
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 51 - 343
Target Start/End: Complemental strand, 42095897 - 42095592
Alignment:
| Q |
51 |
caaatataatagtcgataaatagctctttagaaaacaagtata----acttgatctacttca---------------ttcttttttggaatccgactcag |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||| |
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| T |
42095897 |
caaatataatagtcgataaatagctctttagaaaacaagtatagagtacttgatctacttcaatttacagtgcttcattcttttttggaatccgagtcag |
42095798 |
T |
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| Q |
132 |
ctccaatgatgcactttaatagccccgcgtgaaaccattgatttaattttgctacaatttggcaatgatttattctgctgcttaatactcctatttgcct |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42095797 |
ctccaatgatgcactttaatagccccgcgtgaaaccattgatttaattttgctacaatttggcaatgatttattctgctgcttaatactcctatttgcct |
42095698 |
T |
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| Q |
232 |
tcaagtcgcatctttccctcttaaaaaatttccttttcatatgtatggtaataatgataatgataatgattataacattaaaacacagctgaaatcaata |
331 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42095697 |
tcaagttgcatctttccctcttaaaaaatttccttttcatatgtatggtaacaatgataa------tgattataacattaaaacacagctgaaatcaata |
42095604 |
T |
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| Q |
332 |
gcatgatcatag |
343 |
Q |
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|||||||||||| |
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| T |
42095603 |
gcatgatcatag |
42095592 |
T |
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