View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_high_20 (Length: 378)
Name: NF1913_high_20
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 363
Target Start/End: Original strand, 7687916 - 7688266
Alignment:
| Q |
14 |
aggaaattgtctattacatgttttacattcaaacacacgattgtttgaagtggtagatgaatatgtggcttcaaattgatcacttccacgagaaagtaac |
113 |
Q |
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| T |
7687916 |
aggaaattgtctattacatgttttacattcaaacacacgattgtttgaagtggtagatgaatatgtggcttcaaattgatcacttccacgagaaagtaac |
7688015 |
T |
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| Q |
114 |
atcaaacaatttgccatggttatgctatcaacctctcttgccctcttcatagcacaagaaactatatgtatatacgaagaatgcaac-aaaactaaattt |
212 |
Q |
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| T |
7688016 |
atcaaacaatttgccatggttatgctatcaacctctcttgccctcttcatagcacaagaaactatatgtatatgcgaagaatgcaacaaaaactaaattt |
7688115 |
T |
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| Q |
213 |
agatgttataaggtgtgaaaatggttgtggaagtttgaaagggaatattgaaactctaggagaattagaaaggtggtatttataaagggttgatatagct |
312 |
Q |
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| T |
7688116 |
agatgttataaggtgtgaaaatggttgtggaagtttgaaagggaatattgaaactctaggagaattagaaaggtggtatttataaagggttgatatagct |
7688215 |
T |
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| Q |
313 |
tgtgagtgttgaacacttttgcttatagttgacaatttgagataagaatat |
363 |
Q |
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| T |
7688216 |
tgtgagtgttgaacacttttgcttatagttgacaatttgagataagaatat |
7688266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 52052595 - 52052546
Alignment:
| Q |
92 |
atcacttccacgagaaagtaacatcaaacaatttgccatggttatgctat |
141 |
Q |
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| T |
52052595 |
atcacttccaccagaaagtaacatcaagtatttagccatggttatgctat |
52052546 |
T |
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