View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_high_21 (Length: 375)
Name: NF1913_high_21
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 2382377 - 2382736
Alignment:
| Q |
1 |
atttgtgaattattgtaacatatttggattcacacaccgtttgattttgttaaa-ctaacaagaagaatagtttttatcaaagataacgacaaccaatcg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||| || |||||| ||||||||||| |
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| T |
2382377 |
atttgtgaattattgtaacatatttggattcacacactgtttgatattgttaaaactaacaagaagaatagtttttattaa-gataacaacaaccaatcg |
2382475 |
T |
|
| Q |
100 |
tgattccggtaaactcatcgtcaatacaaatatattatatcattttcaatgaatgcactttgggtgattaaaactttgaaataaacatgttaatttggac |
199 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2382476 |
tgattctgataaactcatcgtcaatacaaatatattatatcattttcaatgaatgcactttgagtgattaaaactttgaaataaacatgttaatttggac |
2382575 |
T |
|
| Q |
200 |
aagaaattcttccttatagttctgtctaattttttaagatggagtttcattttgatacaccgatggtgtaaagaatttttacagcgttagagaaccccga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
2382576 |
aagaaattcttccttatagttctgtctaattttttaagatggagtttcattttgatacaccgacggtgtaaagaatttttacagcgttagagaaccacga |
2382675 |
T |
|
| Q |
300 |
ctaattacatgtttggctatagaagtagttgtggataaaaccaaatattttgagtgatttg |
360 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2382676 |
ctaattacatgtttggctatggaagtagttgtggataaaaccaaatattttgagtgatttg |
2382736 |
T |
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