View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_high_23 (Length: 365)
Name: NF1913_high_23
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 24578935 - 24578599
Alignment:
| Q |
16 |
caaaagcagttgctttctctagagaacggcttccaattgctatgagtgtggcattttgtgctttgcttatggctttgcacaacttgatagagatttgagc |
115 |
Q |
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| T |
24578935 |
caaaagcagttgctttctctagagaacggcttccaattgctatgagtgtggcattttgtgctttgcttatggctttgcacaacttgatagagatttgagc |
24578836 |
T |
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| Q |
116 |
acacccaagaataccaaaccgcacaaccgtttcattagccatctttgaaaggaaaaatagtgaaattttgtgtgagttctttagagttatgtgaaattgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| ||||| |
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| T |
24578835 |
acacccaagaataccaaaccgcacaaccgtttcattagccatctttgaaaggaaaaatagtg-attattgtgtgagttctttagagttatgtgacattgt |
24578737 |
T |
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| Q |
216 |
taagaaggattaatttctattatgataacctaaagaagattagttgaataaatggtcttaaaaatattcttagtttatcattatataactgtagttgggt |
315 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24578736 |
taagaaggattaatttctattatgataatctaaagaagattagttgaataaatggttttaaaaatattcttagtttatcattatataactgtagttgggt |
24578637 |
T |
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| Q |
316 |
ggatcccaagatgttattatatatagtaatttgaccta |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
24578636 |
ggatcccaagatgttattatatatagtaatttgaccta |
24578599 |
T |
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