View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_high_42 (Length: 300)
Name: NF1913_high_42
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 39982421 - 39982685
Alignment:
| Q |
23 |
aagtacttcttccaggataactggcgaagatcctgggtatttgctctgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatatagga |
122 |
Q |
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| T |
39982421 |
aagtacttcttccaggataactggcgaagatcctgggtatttgctctgtggattggtgtcatgttaggcctatttgcctttaaatttgtgcaatatagga |
39982520 |
T |
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| Q |
123 |
gaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982521 |
gaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttg |
39982620 |
T |
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| Q |
223 |
ccgaaacaccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatg |
287 |
Q |
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| T |
39982621 |
ccgaaacaccatcacttggctcaggaataagaccaagctaggcgcttttgttccttttgatgatg |
39982685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 69 - 285
Target Start/End: Original strand, 44898551 - 44898767
Alignment:
| Q |
69 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
168 |
Q |
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| T |
44898551 |
tgtggattggtgttatgtgtggtctatttgcctacaaattcatgcagtatagaagaaaagctgcatatgaagtgatgggccattgtgtctgtatggctaa |
44898650 |
T |
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| Q |
169 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
268 |
Q |
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| T |
44898651 |
aggtgcagctgagacactcaaattgaatatggccattatcttattacctgtttgccgaaacaccgtaacctggcttagggacaagaccaagctaggcatt |
44898750 |
T |
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| Q |
269 |
tttgttccttttgatga |
285 |
Q |
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| T |
44898751 |
gctgttccttttgatga |
44898767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 69 - 285
Target Start/End: Original strand, 44885223 - 44885439
Alignment:
| Q |
69 |
tgtggatttgtgtcatgttaggcctatttgcctttaaatttgtgcaatataggagaagatctgcatataaagtgatggggcactgtgtgtgcatggcaaa |
168 |
Q |
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|||||||| | || |||||||| |||||||||| ||||||||||| ||| | |||| | |||| ||| | |||||||| || ||||| |||||||| || |
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| T |
44885223 |
tgtggattggagttatgttaggtctatttgcctacaaatttgtgcagtatcgaagaaaagctgcttatgaggtgatgggccattgtgtttgcatggctaa |
44885322 |
T |
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| Q |
169 |
aggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctaggcgct |
268 |
Q |
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| T |
44885323 |
aggtgcagctgagacactcaaattgaacatggctcttatcttgttacctgtttgccgaaacactgttacatggctcaggagcaagaccaagctaggcatt |
44885422 |
T |
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| Q |
269 |
tttgttccttttgatga |
285 |
Q |
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| T |
44885423 |
gttgttccttttaatga |
44885439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 138 - 286
Target Start/End: Original strand, 44914534 - 44914682
Alignment:
| Q |
138 |
aagtgatggggcactgtgtgtgcatggcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcac |
237 |
Q |
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|||| ||||| || |||||||||||||| ||||| || ||||| ||||| |||||||||||||| |||||||| || |||||||| |||||||||||||| |
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| T |
44914534 |
aagtaatgggtcattgtgtgtgcatggctaaaggtgcagctgagacactcaaattgaacatggctattatcttgttacctgtttgtcgaaacaccatcac |
44914633 |
T |
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| Q |
238 |
ttggctcaggaataagaccaagctaggcgcttttgttccttttgatgat |
286 |
Q |
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| T |
44914634 |
atggcttaggaacaagaccaaactaggcattgctgttccttttgatgat |
44914682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 286
Target Start/End: Complemental strand, 46562263 - 46562141
Alignment:
| Q |
164 |
gcaaaaggggctgctgaaacacttaaattgaacatggccattatcttattgcctgtttgccgaaacaccatcacttggctcaggaataagaccaagctag |
263 |
Q |
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| T |
46562263 |
gcaaagggtgctgctgagactctcaagttcaacatggcattaattttaatgcctgtttgtagaaacaccatcacttggctcagaagcaagaccaaattag |
46562164 |
T |
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| Q |
264 |
gcgcttttgttccttttgatgat |
286 |
Q |
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| | | ||||||| ||||||||| |
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| T |
46562163 |
gagttgttgttccctttgatgat |
46562141 |
T |
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