View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_high_43 (Length: 295)
Name: NF1913_high_43
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 5442658 - 5442931
Alignment:
| Q |
6 |
agaagcataggttaatagcaattagcctattacatgtgctaccataaaagcaatcaaatgtaaaaactaaccaaatagttgtttagatagacattctttc |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5442658 |
agaaacataggttaatagcaattagcctattacatgtgctaccataaaagcaatcaaatgtaaaaactaaccaaatagttgtttagatagacattctttc |
5442757 |
T |
|
| Q |
106 |
attgtactccttgtgcatccaaatatgacccctccaagttggttcttcctcaaatttctaacacataaagaccctttcactgatttttgagagataggaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
5442758 |
attgtactccttgtgcatccaaatatgacccctccaagttggttcttcctcaaatttctaacacataaagacccattcactggtttttgagagataggaa |
5442857 |
T |
|
| Q |
206 |
tagtccttttggcattaaaagtttgtgttttcctttctgtcctcattctagcacaagaggagaaagtttgtttc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5442858 |
tagtccttttggcattaaaagtttgtgttttcctttctgtcctcattctagcacaagaggagaaagtttgtttc |
5442931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 3855249 - 3854997
Alignment:
| Q |
18 |
taatagcaattagcctattacatgtgctaccataaaagcaatcaaatgtaaaaactaaccaaatagttgtttagatagacattctttcattgtactcctt |
117 |
Q |
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|||||| |||| | |||||| || |||||||||||||||||| |||| ||| |||||||||| |||||||| ||||||||||||||||||||| ||||| |
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| T |
3855249 |
taatagtaatttggctattaaatatgctaccataaaagcaataaaattcaaagactaaccaaagagttgttttgatagacattctttcattgtattcctt |
3855150 |
T |
|
| Q |
118 |
gtgcatccaaatatgacccctccaagttggttcttcctcaaatttctaacacataaagaccctttcactgatttttgagagataggaatagtccttttgg |
217 |
Q |
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|||||||||||||||||||| |||||||| ||||| ||||||||||| |||| |||| || | ||||| |||||| |||||||| |||||||||| |
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| T |
3855149 |
gtgcatccaaatatgaccccaccaagttgattcttattcaaatttctaccacaaaaagtccttctcactagtttttgtgagataggttgagtccttttga |
3855050 |
T |
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| Q |
218 |
cattaaaagtttgtgttttcctttctgtcctcattctagcacaagaggagaaa |
270 |
Q |
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|||||||| |||||| |||||||||| ||| ||| |||||||||||||||||| |
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| T |
3855049 |
cattaaaaatttgtggtttcctttctatccccatcctagcacaagaggagaaa |
3854997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 61 - 270
Target Start/End: Original strand, 13011263 - 13011472
Alignment:
| Q |
61 |
aaatgtaaaaactaaccaaatagttgtttagatagacattctttcattgtactccttgtgcatccaaatatgacccctccaagttggttcttcctcaaat |
160 |
Q |
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||||| ||| |||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| |
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| T |
13011263 |
aaatgcaaagactaaccaaagagttgttttgataaacattcattcattgtactccttgtgcatccaaatatgaccccaccaagttgattcttctccaaat |
13011362 |
T |
|
| Q |
161 |
ttctaacacataaagaccctttcactgatttttgagagataggaatagtccttttggcattaaaagtttgtgttttcctttctgtcctcattctagcaca |
260 |
Q |
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||||| ||||| || || | ||||| |||||| |||||||| | |||||||||| |||||||| | ||||||||| ||| ||||||||| | | |||| |
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| T |
13011363 |
ttctaccacatggagtccttctcactagtttttgtgagataggtagagtccttttgacattaaaaatctgtgttttcatttttgtcctcatccaaacaca |
13011462 |
T |
|
| Q |
261 |
agaggagaaa |
270 |
Q |
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|||||||||| |
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| T |
13011463 |
agaggagaaa |
13011472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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