View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_high_5 (Length: 538)
Name: NF1913_high_5
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 259 - 528
Target Start/End: Original strand, 1403239 - 1403508
Alignment:
| Q |
259 |
ttttccgggtttagtcccccaaaacattggaaaaagttggttttcgtcttgttgttttcatctcagtcgtaatatattattttttcactttacattttac |
358 |
Q |
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| T |
1403239 |
tttttcgggtttagtcccccaaaacattggaaaaagttggttttcgtcttgttgttttcatctcagtcgtaatatattattttttcactttacattttac |
1403338 |
T |
|
| Q |
359 |
tagctcttctagaggagtaaatccaaacataaaacaattatatcttacttggtgttgggactcctgttataacagctctgacatgtataagcttgaagat |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1403339 |
tagctcttctagaggagtaaatccaaacataaaacaattatatcttacttggtgttgggactcctgttataacagctctgacatgtataagcttgaagat |
1403438 |
T |
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| Q |
459 |
acttatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttacctttg |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1403439 |
acttatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttacctttg |
1403508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 3 - 276
Target Start/End: Original strand, 1402955 - 1403227
Alignment:
| Q |
3 |
aatgtataacctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaagcagttgctacatcatt |
102 |
Q |
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| T |
1402955 |
aatgtataacctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaagcagttgctacatcatt |
1403054 |
T |
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| Q |
103 |
acgcacttgtgaaagaggtagcacttctcccactggaaaaaccaaaattttgaactatcatattcaaattgctgaaccttgtactctcannnnnnnattg |
202 |
Q |
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| T |
1403055 |
acgcacttgtgaaagaggtagcacttctcccactggaaaaacaaaaattttgaactatcatattcaaattgctgaaccttgtactctca-ttttttattg |
1403153 |
T |
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| Q |
203 |
tttctctcagcttatagaaaagaatgaataactgtttagtccttgcaatatgtatcttttccgggtttagtccc |
276 |
Q |
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| T |
1403154 |
tttctctcagcttatagaaaagaatgaagaactgtttagtccttgcaatatgtatcttttccggatttagtccc |
1403227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 439 - 524
Target Start/End: Original strand, 1410813 - 1410898
Alignment:
| Q |
439 |
acatgtataagcttgaagatacttatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttacc |
524 |
Q |
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| T |
1410813 |
acatgtatgagcttgaagataatcattccctctggaacaaacttgttaagtgcccattgtacaacatatttgcttttcttgttacc |
1410898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 1409813 - 1409918
Alignment:
| Q |
11 |
acctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaagcagttgctacatcattacgcactt |
110 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||| | ||||| | ||| ||||| | |||| ||||||||| | |||||||| |
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| T |
1409813 |
acctttctctgctcacacatttgcttaaaaggtagaagcatttgatttgtctcacactctatttcttttttgtacgcagctgctacatcgtcacgcactt |
1409912 |
T |
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| Q |
111 |
gtgaaa |
116 |
Q |
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|||||| |
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| T |
1409913 |
gtgaaa |
1409918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 40682213 - 40682087
Alignment:
| Q |
13 |
ctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaagcagttgctacatcattacgcacttgt |
112 |
Q |
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|||||| |||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||| |
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| T |
40682213 |
ctttctttgctcacacaaacttttaaaaggtagaagcattagattt-tttgccactccacttacctttcgaaagcaattgctacatcattacacacttgt |
40682115 |
T |
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| Q |
113 |
gaaagaggtagcacttctcccactggaa |
140 |
Q |
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|||||||| ||||| ||| ||| ||||| |
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| T |
40682114 |
gaaagagggagcacatcttccattggaa |
40682087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 438 - 524
Target Start/End: Original strand, 14245697 - 14245783
Alignment:
| Q |
438 |
gacatgtataagcttgaagatacttatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttacc |
524 |
Q |
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||||||||| |||||||||||| | || | || ||||||| || | ||||||||||||||||||||||||||||||||||||||| |
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| T |
14245697 |
gacatgtatgagcttgaagataatcattacctctggaacaaacttgttaagtgcccattgtacaacatatttgcttttcttgttacc |
14245783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 438 - 524
Target Start/End: Original strand, 6356267 - 6356353
Alignment:
| Q |
438 |
gacatgtataagcttgaagatacttatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttacc |
524 |
Q |
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||||||||| |||||||||||| | || | || ||||||| || | ||||||||||||||||||||||||||||||||||||||| |
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| T |
6356267 |
gacatgtatgagcttgaagataatcattacctctggaacaaacttgttaagtgcccattgtacaacatatttgcttttcttgttacc |
6356353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 439 - 524
Target Start/End: Original strand, 4489429 - 4489514
Alignment:
| Q |
439 |
acatgtataagcttgaagatacttatcccttcatgaacaaatttatcaagtgcccattgtacaacatatttgcttttcttgttacc |
524 |
Q |
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|||||||| |||||||||||| | || || | ||||||| || |||||||||||||||| |||||||||||||||||||||||| |
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| T |
4489429 |
acatgtatgagcttgaagataatcattccctttggaacaaacttgtcaagtgcccattgtagaacatatttgcttttcttgttacc |
4489514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 4488491 - 4488596
Alignment:
| Q |
11 |
acctttctctgctcacacaaactcttaaatggtagaagcatttgatttgtttgccactccacttcccttttgaaagcagttgctacatcattacgcactt |
110 |
Q |
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||||||||||||||||||| ||||||| ||||||| |||||||||||| | | |||| | |||| ||||| | | || ||| ||||||| || ||||| |
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| T |
4488491 |
acctttctctgctcacacattttcttaaaaggtagaaacatttgatttgtctccaactctatttcctttttgtatgtagctgcaacatcatcacacactt |
4488590 |
T |
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| Q |
111 |
gtgaaa |
116 |
Q |
| |
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|||||| |
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| T |
4488591 |
gtgaaa |
4488596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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