View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1913_high_53 (Length: 263)

Name: NF1913_high_53
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1913_high_53
NF1913_high_53
[»] chr3 (4 HSPs)
chr3 (19-188)||(55228094-55228263)
chr3 (208-243)||(55228286-55228321)
chr3 (19-57)||(50725034-50725072)
chr3 (19-57)||(50787778-50787816)
[»] chr2 (3 HSPs)
chr2 (18-50)||(44078576-44078608)
chr2 (18-49)||(21631814-21631845)
chr2 (18-50)||(21633354-21633386)
[»] chr1 (3 HSPs)
chr1 (19-55)||(13344463-13344499)
chr1 (19-50)||(46038895-46038926)
chr1 (19-47)||(6912468-6912496)
[»] chr7 (3 HSPs)
chr7 (19-49)||(26974226-26974256)
chr7 (19-49)||(36801888-36801918)
chr7 (19-47)||(36204469-36204497)
[»] chr4 (2 HSPs)
chr4 (18-55)||(55318067-55318104)
chr4 (19-47)||(13306940-13306968)
[»] chr6 (1 HSPs)
chr6 (18-46)||(12203891-12203919)
[»] chr5 (1 HSPs)
chr5 (19-51)||(1055365-1055397)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 55228094 - 55228263
Alignment:
Q  19 atagggggccaaaagtgcaattaaacctaaaagaaatcacacaagcatatgttgcttgcatccaattttattgtgtgatgtattctactttctataaaca 118  Q
    ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  55228094 atagggggccaaaagtataattaaacctaaaagaaatcacataagcatatgttgcttgcatccaattttattgtgtgatgtattctactttctagaaaca 55228193  T
Q  119 ctatactatgacaatcacacttgtgcaacaatgtaataagcagtttccttaaccctcaaacaaaaacagg 188  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  55228194 ctatactatgacaatcacacttgtgcaacaatgtgataagcagtttccttaaccctcaaacaaaaacagg 55228263  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 243
Target Start/End: Original strand, 55228286 - 55228321
Alignment:
Q  208 tgcaagtttggttattataatagttgatctatcttt 243  Q
    ||||||||||||||||||||||||||||||||||||    
T  55228286 tgcaagtttggttattataatagttgatctatcttt 55228321  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 50725034 - 50725072
Alignment:
Q  19 atagggggccaaaagtgcaattaaacctaaaagaaatca 57  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  50725034 atagggggccaaaagtgcaattaagcctaaaacaaatca 50725072  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 50787816 - 50787778
Alignment:
Q  19 atagggggccaaaagtgcaattaaacctaaaagaaatca 57  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  50787816 atagggggccaaaagtgcaattaagcctaaaacaaatca 50787778  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 44078576 - 44078608
Alignment:
Q  18 catagggggccaaaagtgcaattaaacctaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  44078576 catagggggccaaaagtgcaattaaacctaaaa 44078608  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 21631845 - 21631814
Alignment:
Q  18 catagggggccaaaagtgcaattaaacctaaa 49  Q
    ||||||||||||||||||||||||||||||||    
T  21631845 catagggggccaaaagtgcaattaaacctaaa 21631814  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 21633354 - 21633386
Alignment:
Q  18 catagggggccaaaagtgcaattaaacctaaaa 50  Q
    ||||||||||||||||||||||||| |||||||    
T  21633354 catagggggccaaaagtgcaattaagcctaaaa 21633386  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 13344463 - 13344499
Alignment:
Q  19 atagggggccaaaagtgcaattaaacctaaaagaaat 55  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13344463 atagggggccaaaagtgcaattaaacctaaaaaaaat 13344499  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 46038926 - 46038895
Alignment:
Q  19 atagggggccaaaagtgcaattaaacctaaaa 50  Q
    ||||||||||||||||||||||||||||||||    
T  46038926 atagggggccaaaagtgcaattaaacctaaaa 46038895  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 6912468 - 6912496
Alignment:
Q  19 atagggggccaaaagtgcaattaaaccta 47  Q
    |||||||||||||||||||||||||||||    
T  6912468 atagggggccaaaagtgcaattaaaccta 6912496  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 26974256 - 26974226
Alignment:
Q  19 atagggggccaaaagtgcaattaaacctaaa 49  Q
    |||||||||||||||||||||||||||||||    
T  26974256 atagggggccaaaagtgcaattaaacctaaa 26974226  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 36801888 - 36801918
Alignment:
Q  19 atagggggccaaaagtgcaattaaacctaaa 49  Q
    |||||||||||||||||||||||||||||||    
T  36801888 atagggggccaaaagtgcaattaaacctaaa 36801918  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 36204469 - 36204497
Alignment:
Q  19 atagggggccaaaagtgcaattaaaccta 47  Q
    |||||||||||||||||||||||||||||    
T  36204469 atagggggccaaaagtgcaattaaaccta 36204497  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 55318067 - 55318104
Alignment:
Q  18 catagggggccaaaagtgcaattaaacctaaaagaaat 55  Q
    ||||||||||||||||||||||||| || |||||||||    
T  55318067 catagggggccaaaagtgcaattaagccaaaaagaaat 55318104  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 13306940 - 13306968
Alignment:
Q  19 atagggggccaaaagtgcaattaaaccta 47  Q
    |||||||||||||||||||||||||||||    
T  13306940 atagggggccaaaagtgcaattaaaccta 13306968  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 12203919 - 12203891
Alignment:
Q  18 catagggggccaaaagtgcaattaaacct 46  Q
    |||||||||||||||||||||||||||||    
T  12203919 catagggggccaaaagtgcaattaaacct 12203891  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 1055397 - 1055365
Alignment:
Q  19 atagggggccaaaagtgcaattaaacctaaaag 51  Q
    ||||||| |||||||||||||||||||||||||    
T  1055397 ataggggtccaaaagtgcaattaaacctaaaag 1055365  T

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