View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_high_61 (Length: 250)
Name: NF1913_high_61
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_high_61 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 7706607 - 7706844
Alignment:
| Q |
13 |
aatatattcacaagctgaaataaagttaaagtacattacaacacaagctaactagtactagtattttgcatcannnnnnnacacaaatgacatttcatat |
112 |
Q |
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| T |
7706607 |
aatatattcacaagctgaaataaagttaaagtatattacaacacaagttaactagtactagtattttacatcattttttaacacaaatgacatttcatat |
7706706 |
T |
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| Q |
113 |
ctttatgtagctacaggaatcaaaagtatgtatttgggtattcatcaaatataattaaaatgtcaacctcgaatctaagtatgcatttgtaatagtacgt |
212 |
Q |
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| T |
7706707 |
atttatgtagctacaggaattaaaagtatgtatttgggtattcatcaaatataattaaaatgtcaacctcgaatcgaagtatgcatttgtaatagtatgt |
7706806 |
T |
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| Q |
213 |
agctaagtacaaaacttgagttagcataaattaaatta |
250 |
Q |
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| T |
7706807 |
agctaagtacaaagcttgagttagcataaattaaatta |
7706844 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 23083522 - 23083568
Alignment:
| Q |
204 |
atagtacgtagctaagtacaaaacttgagttagcataaattaaatta |
250 |
Q |
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| T |
23083522 |
atagtacgtagctaagtacaaagcttgagttagcataaattaaatta |
23083568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 15379596 - 15379545
Alignment:
| Q |
100 |
tgacatttcatatctttatgtagctacaggaatcaaaagtatgtatttgggt |
151 |
Q |
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| T |
15379596 |
tgacatttcatatctttatatcgctacaggaatcaaaagtatgcatttgggt |
15379545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 15379294 - 15379244
Alignment:
| Q |
200 |
tgtaatagtacgtagctaagtacaaaacttgagttagcataaattaaatta |
250 |
Q |
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| T |
15379294 |
tgtaatagtacatagctaaggacaaaacatgagttaacataaattaaatta |
15379244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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