View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1913_high_7 (Length: 531)

Name: NF1913_high_7
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1913_high_7
NF1913_high_7
[»] chr6 (2 HSPs)
chr6 (20-525)||(13328601-13329109)
chr6 (452-525)||(1217504-1217581)
[»] chr1 (4 HSPs)
chr1 (400-525)||(25713117-25713242)
chr1 (433-525)||(52964412-52964503)
chr1 (430-525)||(52961307-52961401)
chr1 (431-525)||(18416188-18416280)
[»] chr2 (3 HSPs)
chr2 (394-524)||(30701252-30701382)
chr2 (456-524)||(30701394-30701462)
chr2 (445-525)||(30701463-30701543)
[»] chr8 (2 HSPs)
chr8 (433-525)||(37001067-37001158)
chr8 (453-525)||(36996987-36997056)
[»] chr7 (1 HSPs)
chr7 (430-525)||(37625139-37625233)
[»] chr4 (3 HSPs)
chr4 (431-525)||(33831143-33831235)
chr4 (431-525)||(37920552-37920644)
chr4 (431-525)||(33835078-33835170)
[»] chr5 (2 HSPs)
chr5 (431-525)||(8081382-8081475)
chr5 (449-525)||(30589118-30589194)


Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 525
Target Start/End: Original strand, 13328601 - 13329109
Alignment:
Q  20 taaaatgcacctcaaatgtgggacccaaaaactggaaggggtccaaaaagaaccaagaaggtaaaatgagtcagatgagacaaaccgcggtggaaggtga 119  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||| ||||||||| |||||||||    
T  13328601 taaaacgcacctcaaatgtgggacccaaaaactggaaggggtccaaaatgaaccaagaaggggaaacgagtcagatgagaaaaaccgcggcggaaggtga 13328700  T
Q  120 tgcacagagggtggcgcgtgtactccacaagccgataattatctaatgtgatggcggcgtgtgtc------tgta-----attggcagtggcgttttagg 208  Q
    ||| |||||||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||      ||||     | | ||||||||||||||||    
T  13328701 tgcccagagggtggcgtgtgtactccacacgtcgataattacctaatgtgatggcggcgtgtgtcgacacgtgtatctataattgcagtggcgttttagg 13328800  T
Q  209 tgttgataggtcgacgacctttggtgcttatggtagggcgcgtgtttaaaatagacccacatgaaacttcgccggcgacggcggtgcagtcactatttca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |  |||||||||||||||||||        | | |||||||||    
T  13328801 tgttgataggtcgacgacctttggtgcttatggtagggcgcgtgtttaatataaactctgatgaaacttcgccggcgac--------aataactatttca 13328892  T
Q  309 aagtagacaacaaacaagcataaacttctagggttagccttgacgacggccaaccctaaaaacctggatccagaacctgcactggtaccaacttgaataa 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13328893 aagtagacaacaaacaagcataaacttctagggttagccttgacgacggccaaccctaaaaacctggatccagaacctgcactggtaccaacttgaataa 13328992  T
Q  409 tttaaattgaataattcattcattacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcata 508  Q
    |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13328993 tttaaattgaataactcattcattacaatgacgtatgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcata 13329092  T
Q  509 ataagtagagaataatc 525  Q
    |||||||||||||||||    
T  13329093 ataagtagagaataatc 13329109  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 1217504 - 1217581
Alignment:
Q  452 tatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagc-----ataataagtagagaataatc 525  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  1217504 tatatacac-agagaatctctcaagaaaacataaataaggaaactaaatcaagcacagtataataagtagagaataatc 1217581  T

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Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 400 - 525
Target Start/End: Complemental strand, 25713242 - 25713117
Alignment:
Q  400 cttgaataatttaaattgaataattcattcattacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaa 499  Q
    ||||||||||||| ||||||||| ||    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25713242 cttgaataatttagattgaataactctaatattacaatgatgtatgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaag 25713143  T
Q  500 tcaagcataataagtagagaataatc 525  Q
    ||||||||||||||||||||||||||    
T  25713142 tcaagcataataagtagagaataatc 25713117  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 433 - 525
Target Start/End: Complemental strand, 52964503 - 52964412
Alignment:
Q  433 acaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 525  Q
    |||||||||||  ||  |||||||||| ||||||||||||||| ||| || ||||||| |||||||||||| |||||||| ||||||||||||    
T  52964503 acaatgatgtatacaagcttatatacaagagagaatctctcaataaagca-aaataagaaaactaaatcaaccataataaatagagaataatc 52964412  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 525
Target Start/End: Complemental strand, 52961401 - 52961307
Alignment:
Q  430 attacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 525  Q
    ||||||||||||||  || |||||| |||| |||| |||||||||| ||| || ||||||| |||||||||||| |||||||| || |||||||||    
T  52961401 attacaatgatgtatacaaacttatgtacaagagaaaatctctcaataaagca-aaataagcaaactaaatcaaccataataaataaagaataatc 52961307  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 525
Target Start/End: Original strand, 18416188 - 18416280
Alignment:
Q  431 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 525  Q
    ||||||||||||| |||   ||||||||| |||||||| ||||| |||| || |||  | |||||||||||||  ||||||| ||||||||||||    
T  18416188 ttacaatgatgtatgcaagtttatatacaagagagaatatctcatgaaagcaaaaa--acgaaactaaatcaactataataaatagagaataatc 18416280  T

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Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 394 - 524
Target Start/End: Original strand, 30701252 - 30701382
Alignment:
Q  394 taccaacttgaataatttaaattgaataattcattcattacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaa 493  Q
    ||||||||||||||||||| ||||||||| |  |  |||||||| ||||  |||| |||| |||||| |||||||||||||||||| |||||||||| ||    
T  30701252 taccaacttgaataatttagattgaataacttgtatattacaataatgtgtgcactcttacatacacaagagaatctctcaagaaagcataaataagaaa 30701351  T
Q  494 actaaatcaagcataataagtagagaataat 524  Q
    ||||||||||||||||||| |||||||||||    
T  30701352 actaaatcaagcataataattagagaataat 30701382  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 456 - 524
Target Start/End: Original strand, 30701394 - 30701462
Alignment:
Q  456 tacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataat 524  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  30701394 tacacaagataatctctcaagaaagcataaataaggaaactaaatcaagcataataattagagaataat 30701462  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 445 - 525
Target Start/End: Original strand, 30701463 - 30701543
Alignment:
Q  445 gcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 525  Q
    |||| |||| |||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||    
T  30701463 gcactcttacatacacaagataatctctcaagaaagcataaataaagaaactaaatcaagcataataattagagaataatc 30701543  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 433 - 525
Target Start/End: Complemental strand, 37001158 - 37001067
Alignment:
Q  433 acaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 525  Q
    ||||||||||| |||  |||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||||    
T  37001158 acaatgatgtatgcaagcttatatacaagagagaatctctcatgaaaaca-aaataaggaaactaaatcaaccataataaatagagaataatc 37001067  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 525
Target Start/End: Complemental strand, 36997056 - 36996987
Alignment:
Q  453 atatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 525  Q
    |||||||||||||||||||  | ||||||| |||||||||||||||||||| |||||||| ||||||||||||    
T  36997056 atatacacgagagaatctc--atgaaaaca-aaataaggaaactaaatcaaccataataaatagagaataatc 36996987  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 430 - 525
Target Start/End: Complemental strand, 37625233 - 37625139
Alignment:
Q  430 attacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 525  Q
    |||||||||||| |  || |||||||||||||||||||| |||||| |||||| |||||| ||||||||||||| ||| |||| ||||||||||||    
T  37625233 attacaatgatgcatacaaacttatatacacgagagaatatctcaataaaaca-aaataatgaaactaaatcaaccatgataaatagagaataatc 37625139  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 431 - 525
Target Start/End: Complemental strand, 33831235 - 33831143
Alignment:
Q  431 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 525  Q
    ||||||||||||| |||  |||||||||| |||||||| |||||||||| |  ||| ||||||||||||||||  ||||||| ||||||||||||    
T  33831235 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaagaaagc--aaaaaaggaaactaaatcaactataataaatagagaataatc 33831143  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 525
Target Start/End: Original strand, 37920552 - 37920644
Alignment:
Q  431 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 525  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| || |||  |||||||||||||||  ||||||| ||||||||||||    
T  37920552 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagcaaaaa--aggaaactaaatcaactataataaatagagaataatc 37920644  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 525
Target Start/End: Complemental strand, 33835170 - 33835078
Alignment:
Q  431 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 525  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| |  ||| ||||||||||||||||  ||||||| || |||||||||    
T  33835170 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagc--aaaaaaggaaactaaatcaactataataaataaagaataatc 33835078  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 525
Target Start/End: Original strand, 8081382 - 8081475
Alignment:
Q  431 ttacaatgatgtacgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagt-agagaataatc 525  Q
    ||||||||||||| |||  |||||||||| |||||||| ||||| |||| |  ||| ||||||||||||||||  ||||||| | |||||||||||    
T  8081382 ttacaatgatgtatgcaagcttatatacaagagagaatatctcaggaaagc--aaaaaaggaaactaaatcaactataataaataagagaataatc 8081475  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 525
Target Start/End: Original strand, 30589118 - 30589194
Alignment:
Q  449 acttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaagcataataagtagagaataatc 525  Q
    ||||||||||| || |||||||||||||||||   ||| || |||| |||||||| |||| ||| ||||||||||||    
T  30589118 acttatatacaagaaagaatctctcaagaaaaagaaaacaatgaaattaaatcaatcatagtaaatagagaataatc 30589194  T

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