View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1913_high_71 (Length: 238)
Name: NF1913_high_71
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_high_71 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 31742710 - 31742489
Alignment:
| Q |
17 |
acaaacacgcctctccctcttcacaagaatacatcggttttattctggtttaatgtggctattgatattctcacaacttatttggatttcaaattgaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
31742710 |
acaaacacgcctctccctcttcacaagaatacatcggttttattatggtttaatgtggctattgatattctcacagctcatttggatttcaaattgaaaa |
31742611 |
T |
|
| Q |
117 |
aagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaa |
216 |
Q |
| |
|
||||||||||||||||||||| || |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31742610 |
aagtaggcaaactcccaccacttttttccaaaaaatttcgaccaaaattttgagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaa |
31742511 |
T |
|
| Q |
217 |
gtttaaacatccggtcattctc |
238 |
Q |
| |
|
|||||| ||||| ||||||||| |
|
|
| T |
31742510 |
gtttaaccatccagtcattctc |
31742489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 5165228 - 5165008
Alignment:
| Q |
17 |
acaaacacgcctctccctcttcacaagaatacatcggttttattctggtttaatgtggctattgatattctcacaacttatttggatttcaaattgaaaa |
116 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
5165228 |
acaaacacacctctcc-tcttcacaagaatacatcagttttattctggtttaatgtggctattgatattctcacagctcatttggatttcaaattgaaaa |
5165130 |
T |
|
| Q |
117 |
aagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaa |
216 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5165129 |
aagtaggcaaactcccaccacttttttccagaaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttaaatagagtagaaatgaa |
5165030 |
T |
|
| Q |
217 |
gtttaaacatccggtcattctc |
238 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
5165029 |
gtttaaacatcccgtcattctc |
5165008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 3804726 - 3804930
Alignment:
| Q |
17 |
acaaacacgcctctccctcttcacaagaatacatcggttttattctggtttaatgtggctattgatattctcacaacttatttggatttcaaattgaaaa |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3804726 |
acaaacacgtctctccctcttcacaagaatacataggttttatt----------gtggctattgatattctca-------tttggatttcaaattgaaaa |
3804808 |
T |
|
| Q |
117 |
aagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaa |
216 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3804809 |
aagtaggcaaactcccaccacttttttccagaaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttgaatagagtagaaatgaa |
3804908 |
T |
|
| Q |
217 |
gtttaaacatccggtcattctc |
238 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
3804909 |
gtttaaacatctagtcattctc |
3804930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 8435255 - 8435121
Alignment:
| Q |
104 |
ttcaaattgaaaaaagtaggcaaactcccaccacnnnnnnncataaaattcccaccaaaattttgagcaaataaacttttgaaatttcaaattttgaata |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8435255 |
ttcaaattgaaaaaagtaggcaaactcccaccactttttttcataaaattcccaccaaaattttgagcaaataaatttttgaaatttcaaattttgaata |
8435156 |
T |
|
| Q |
204 |
gagtagaaatgaagtttaaacatccggtcattctc |
238 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8435155 |
gagtagaaatgaagtttaaacatccagtcattctc |
8435121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 27149818 - 27149782
Alignment:
| Q |
17 |
acaaacacgcctctccctcttcacaagaatacatcgg |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27149818 |
acaaacacgcctctccctcttcacaagaatacatcgg |
27149782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University