View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1913_high_72 (Length: 237)
Name: NF1913_high_72
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_high_72 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25922654 - 25922434
Alignment:
| Q |
1 |
cggtaactccaacaacatctatagctccaatccttctctatgactttagtagcttagcacgaacctgttcttctgccgtcgcgattaacaatcacaacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25922654 |
cggtaactccaacaacatctatagctccaatccttctctatgactttagtagcttagcacgaacctgttcttctgccgtcgcgtttaacaatcacaacac |
25922555 |
T |
|
| Q |
101 |
catcaagaacctcgtggtggagttttacggcaccgacaaagagtggacatgacacttgagcgacctccgtcgtctggtgagtcttgtgcagaagaaagga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25922554 |
catcaagaacctcgtggtggagttttacggcaccgacaaagagtggacaagacacttgagcgacctccgtcgtctggtgagtcttgtgcagaagaaagga |
25922455 |
T |
|
| Q |
201 |
actatgttttatggtcgatat |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
25922454 |
actatgttttatggtcgatat |
25922434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 42488849 - 42488943
Alignment:
| Q |
63 |
acctgttcttctgccgtcgcgattaacaatcacaacaccatcaagaacctcgtggtggagttttacggcaccgacaaagagtggacatgacactt |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| || ||||||||| | |||| ||||||| |
|
|
| T |
42488849 |
acctgttcttctgccgtcgcgattaacaatcactacaccatcaagaaccccgtggtggaattttacgacaacgacaaagaattgacaagacactt |
42488943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 41662947 - 41663105
Alignment:
| Q |
63 |
acctgttcttctgccgtcgcgattaacaatcacaacaccatcaagaacctcgtggtggagttttacggcaccgacaaagagtggacatgacacttgagcg |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| || ||||||||| | |||| |||||||||||| |
|
|
| T |
41662947 |
acctgttcttctgccgtcgcgattaacaatcactacaccatcaagaaccccgtggtggaattttacgacaacgacaaagaattgacaagacacttgagcg |
41663046 |
T |
|
| Q |
163 |
acctccgtcgtctggtgagtcttgtgcagaagaaaggaactatgttttatggtcgatat |
221 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
41663047 |
acctccatcgtccggtgagtctcgtgcagatgaaaggaaccatgttttatggccgatat |
41663105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 40806351 - 40806193
Alignment:
| Q |
63 |
acctgttcttctgccgtcgcgattaacaatcacaacaccatcaagaacctcgtggtggagttttacggcaccgacaaagagtggacatgacacttgagcg |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||| || ||||||||| | |||| |||||||||||| |
|
|
| T |
40806351 |
acctgttcttctgccgtcgcgattaacaatcactacaccataaagaaccccgtggtggaattttacgacaacgacaaagaattgacaagacacttgagcg |
40806252 |
T |
|
| Q |
163 |
acctccgtcgtctggtgagtcttgtgcagaagaaaggaactatgttttatggtcgatat |
221 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
40806251 |
acctccgtcgtccggtgagtctcgtgcagatgaaaggaaccatgttttatggccgatat |
40806193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 38616914 - 38617078
Alignment:
| Q |
63 |
acctgttcttctgccgtcgcgattaacaatcacaacaccatcaagaacctcgtggtggagttttacggcacc------gacaaagagtggacatgacact |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| || | |||||||| | |||| |||||| |
|
|
| T |
38616914 |
acctgttcttctgccgtcgcgattaacaatcactacaccatcaagaaccccgtggtggaattttacgacaacgacaaagacaaagaattgacaagacact |
38617013 |
T |
|
| Q |
157 |
tgagcgacctccgtcgtctggtgagtcttgtgcagaagaaaggaactatgttttatggtcgatat |
221 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
38617014 |
tgagcgacctccgtagtccggtgagtctcgtgcagatgaaaggaaccatgttttatggccgatat |
38617078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University