View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_11 (Length: 470)
Name: NF1913_low_11
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 454
Target Start/End: Original strand, 15220796 - 15221242
Alignment:
| Q |
10 |
aagaatatattggaggcactttagcagtcaagccaaagcaataggaactatagtatcaatggctggagcatttgttgtcatattatacaagggtccacca |
109 |
Q |
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| T |
15220796 |
aagaatatattggaggcactttagcagtcaagccaaagcaataggaactatagtatcaatggctggagcatttgttgtcatattatacaagggtccacca |
15220895 |
T |
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| Q |
110 |
atcttgaagatacattcatcaatttcttacaacacacttcaattttcaccaaatctgaattggattttgggagggtttttatgtgctggagattctttac |
209 |
Q |
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| T |
15220896 |
atcttgaagatacattcatcaatttcttacaacacacttcaattttcaccaaatctgaattggattttgggagggtttttatgtgctggagattctttac |
15220995 |
T |
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| Q |
210 |
tttcttcaatgtggtacatatatcaggtagggtcactttttaacattttacatatttcatttaccaccttt---nnnnnnnnnnnnnnntcatttcgacc |
306 |
Q |
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| T |
15220996 |
tttcctcaatgtggtacatatatcaggta-ggtcactttttaacattttacatatttcatttaccaccttttgaaataaaaaataaaaatcatttcaacc |
15221094 |
T |
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| Q |
307 |
actatgtgtgtgtgttagtctttggacctttttcttttgagtaatatgatttttactacaaggtaaattaattttcggttttcccgctacatgttttagg |
406 |
Q |
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| T |
15221095 |
actatgtgtgtgtgttagtctttggacctttttcttttgagtaatatgttttttactacaaggtaaattaattttcggttttccctctacatgttttagg |
15221194 |
T |
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| Q |
407 |
tttcagtaacaaagaaataccctgctgtaatagtcatagtgttcttcc |
454 |
Q |
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| T |
15221195 |
tttcagtaacaaagaaataccctgctgtaatagtcatagtgttcttcc |
15221242 |
T |
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