View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_12 (Length: 462)
Name: NF1913_low_12
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 5146233 - 5146661
Alignment:
| Q |
9 |
gaagaatatggttactaataatgaaggattagtttctccaagaagtggtggtgattatgatgatgatgcttccaagaacaagattcaagcaaaacattca |
108 |
Q |
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| T |
5146233 |
gaagaaaatggttactaataatgaaggattagtttctccaagaagtggtggtgattatgatgatgatgcttccaagaacaagattcaagcaaaacattca |
5146332 |
T |
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| Q |
109 |
cacaagaaaagttggtgatcattgtatgctgttcagaattcagatcactctcttatttttgtttcttcatgtttgcatttttgttggttaggattagaat |
208 |
Q |
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| T |
5146333 |
cacaagaaaagttggtgatcattgtatgctgttcagaattcagatcactctcttatttttgtttcttcatgtttgcatttttgttggttaggattagaat |
5146432 |
T |
|
| Q |
209 |
tttggttgtgtgaaatgtgaatacttgtatannnnnnngaatgaagaagacttgcttgaaaagagttgactattcaacctttcttgttacatgttcattg |
308 |
Q |
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| T |
5146433 |
tttggttgtgtgaaatgtgaatacttgtatatttttttgaatgaagaagacttgcttgaaaagagttgactattcaacctttcttgttacatgttcattg |
5146532 |
T |
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| Q |
309 |
ttctcaatgtagatcattgtttt-aattgttgtccataagtgcaattataacttcagtgtagatcttggtagagttagtttatgcaattcatgcctatct |
407 |
Q |
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| T |
5146533 |
ttcacaatgtagatcattgttttaaattgttgtccataagtgcaattataacttcagtgtagatcttggtagagttagtttatgcaattcatgc----ct |
5146628 |
T |
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| Q |
408 |
atgatgtagttaattgagtcaaattccttaatc |
440 |
Q |
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| T |
5146629 |
atgatgtagttaattgagtcaaattccttaatc |
5146661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 40 - 368
Target Start/End: Original strand, 5389102 - 5389413
Alignment:
| Q |
40 |
gtttctccaagaagtggtggtgattatgatgatgatgcttccaagaacaagattcaagcaaaacattcacacaagaaaagttggtgatcattgtatgctg |
139 |
Q |
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| T |
5389102 |
gtttctccaagaagtggtggtgaatatgatgaag---cttccaagaacaagattcaaacaaaacattcacacaagaaaaattggtgatcattgaatgctg |
5389198 |
T |
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| Q |
140 |
ttcagaattcagatcactctcttatttttgtttcttcatgtttgcatttttgttggttaggattagaattttggttgtgtgaaatgtgaatacttgtata |
239 |
Q |
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| T |
5389199 |
ttcaga-------tcactcccttatttttgtttcttcttctttttctttttctttttcatgttt-gaatttcggttgtgtgaaatgtgaatacttgtata |
5389290 |
T |
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| Q |
240 |
nnnnnnngaatgaagaagacttgcttgaaaagagttgactattcaacctttcttgttacatgttcattgttctcaatgtagatcattgttt-taattgtt |
338 |
Q |
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| T |
5389291 |
tttttttgaa-------gacttgcttgaaaagagttgactattcaacctttcttgttacatgatcagtgttctcaatgtagatcattgtttcaaattgtt |
5389383 |
T |
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| Q |
339 |
gtccataagtgcaattataacttcagtgta |
368 |
Q |
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| T |
5389384 |
gtccacaagtgcaattataacttcaatgta |
5389413 |
T |
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