View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1913_low_15 (Length: 446)
Name: NF1913_low_15
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Original strand, 51525779 - 51526196
Alignment:
| Q |
20 |
caagaatcatgagtctcactagggtcctattattgtaaacattaactaacataatgcatacatataactaactaataataagcaacattaaattagcatg |
119 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51525779 |
caagaatcaagagtctcactagggtcctattattgtaaacattaactaacataatgcatacatataactaactaataataagcaacattaaattagcatg |
51525878 |
T |
|
| Q |
120 |
tgctgcaattataattttcttgatcttcattagtgaaatgcaagtctcacccgattatcataccttaattttcattacaatttcttctttatgtatgggc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51525879 |
tgctgcaattataattttcttgatcttcattagtgaaatgcaagtctcacccgattatcatatcttaattttcattacaatttcttctttatgtatgggc |
51525978 |
T |
|
| Q |
220 |
atgtgcagctgtaagtggtagagggttcatagcacgcgacatttcatttcagaacaccgcaggtgccgagaagcaccaagcagtggcgttaagatcagac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51525979 |
atgtgcagctgtaagtggtagagggttcatagcacgcgacatttcatttcagaacaccgcaggtgccgagaagcaccaagcagtggcgttaagatcagac |
51526078 |
T |
|
| Q |
320 |
tctgacctctcagtattttatcggtgtgggatattcggttatcaagatagcctatatactcacaccatgcgtcagttctaccgtgaatgcaaaattagtg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51526079 |
tctgacctctcagtattttatcggtgtgggatattcggttatcaagatagcctatatactcacaccatgcgtcagttctaccgtgaatgcaaaattagtg |
51526178 |
T |
|
| Q |
420 |
gtactgtggatttcatct |
437 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
51526179 |
gtactgtggatttcatct |
51526196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 95 - 378
Target Start/End: Original strand, 51531600 - 51531884
Alignment:
| Q |
95 |
taataagcaacattaaattagcatgtgctgcaattataattttcttgatcttcattag-tgaaatgcaagtctcacccgattatcataccttaattttca |
193 |
Q |
| |
|
||||||| ||||||| |||| ||||| ||||||||||||||||||| ||||||| ||| ||||||| ||||| | ||| ||| ||||||||||||| |
|
|
| T |
51531600 |
taataagtaacattatattatcatgttctgcaattataattttcttaatcttcaatagctgaaatgtaagtcaggttcaattctcacaccttaattttca |
51531699 |
T |
|
| Q |
194 |
ttacaatttcttctttatgtatgggcatgtgcagctgtaagtggtagagggttcatagcacgcgacatttcatttcagaacaccgcaggtgccgagaagc |
293 |
Q |
| |
|
|| | |||||||||||||||||| ||||||||||||| | ||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||| |
|
|
| T |
51531700 |
ttttattttcttctttatgtatggacatgtgcagctgttaatggtagagggttcatagcatgcaacatttcatttcaaaacaccgcaggtcccgagaagg |
51531799 |
T |
|
| Q |
294 |
accaagcagtggcgttaagatcagactctgacctctcagtattttatcggtgtgggatattcggttatcaagatagcctatatac |
378 |
Q |
| |
|
| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51531800 |
aacaagcagtggctttaagatcggactctgacctctctgtattttatcggtgtgggatattcggttatcaagatagcctatatac |
51531884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 51531422 - 51531466
Alignment:
| Q |
34 |
ctcactagggtcctattattgtaaacattaactaacataatgcat |
78 |
Q |
| |
|
|||| ||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
51531422 |
ctcagtagggccttattattgtaaacattaactgacataatgcat |
51531466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 221 - 437
Target Start/End: Complemental strand, 19510033 - 19509817
Alignment:
| Q |
221 |
tgtgcagctgtaagtggtagagggttcatagcacgcgacatttcatttcagaacaccgcaggtgccgagaagcaccaagcagtggcgttaagatcagact |
320 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| | ||||| || ||||||||||| |||||| | |||||||||||||||||||| ||||||| |||| |
|
|
| T |
19510033 |
tgtgcagctgttagtggtagaggattcatagcaagagacatctcttttcagaacactgcaggtcctgagaagcaccaagcagtggcactaagatccgact |
19509934 |
T |
|
| Q |
321 |
ctgacctctcagtattttatcggtgtgggatattcggttatcaagatagcctatatactcacaccatgcgtcagttctaccgtgaatgcaaaattagtgg |
420 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| || ||||| ||||| ||||| || || || || ||||| || |||| ||| ||||||||||| ||||| |
|
|
| T |
19509933 |
ctgacctctctgtattctatcgatgtgggatttttggttaccaagacagcctctacacgcatacaatgcgccaattcttccgagaatgcaaaataagtgg |
19509834 |
T |
|
| Q |
421 |
tactgtggatttcatct |
437 |
Q |
| |
|
|| |||||||| |||| |
|
|
| T |
19509833 |
cacggtggattttatct |
19509817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 1606599 - 1606529
Alignment:
| Q |
296 |
caagcagtggcgttaagatcagactctgacctctcagtattttatcggtgtgggatattcggttatcaaga |
366 |
Q |
| |
|
|||||||||||| ||||||||| ||| || |||||||| || |||||||||| |||| ||||||||||| |
|
|
| T |
1606599 |
caagcagtggcgctaagatcagcctccgatctctcagttttctatcggtgtgccatatcaggttatcaaga |
1606529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University