View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_16 (Length: 436)
Name: NF1913_low_16
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 428
Target Start/End: Original strand, 16564885 - 16565306
Alignment:
| Q |
17 |
caacaaagacaaaatttagatgtctttcgatctgtttttt-gtgcattttgagaaaatgattgatttaatagagaaattatagtatagttaattatgaat |
115 |
Q |
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| T |
16564885 |
caacaaagacaaaatttagatgtctttcgatctgtttttttgtgcattttgagaaaatgattgatttaatagaaaaattatagtatagttaattatgaat |
16564984 |
T |
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| Q |
116 |
attttaagaagaataccacaaaaatacttnnnnnnntgtacataaataaattatgtcattgcaataatataagtcatatttaactacagttctgtgcaat |
215 |
Q |
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| T |
16564985 |
attttaagaagaataccacaaaaatagttaaaaaaatgtacataaaaaaattatgtcattgcaataatataagtcatatttaactacagttttgtgcaat |
16565084 |
T |
|
| Q |
216 |
at---------atcatgcaccaatatgacaaactaagatcaaattcgttgtcataattgtttttataagctttttacccttaaaagactccatttccact |
306 |
Q |
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| T |
16565085 |
atatatcatatatcatgcaccaatatgacaaactaagatcaaattcgttgtcataattgtttttataagctttttacccttaaaagactccatttccact |
16565184 |
T |
|
| Q |
307 |
ctgagtgccatcattgcagttgcattggtgggcatgcatgggttgctttaagcctttaatatcgactttaattgtttaataaagtacnnnnnnngctagg |
406 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16565185 |
ctcagtgccatcattgcagttgcattggtgggcatgcatgggttgctttaagcctttaatatcgactttaattgtttaataaagtactttttttgctagg |
16565284 |
T |
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| Q |
407 |
aatgatggaatgtccctttgct |
428 |
Q |
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| T |
16565285 |
aatgatggaatgtccctttgct |
16565306 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 52822457 - 52822524
Alignment:
| Q |
288 |
aaaagactccatttccactctgagtgccatcattgcagttgcattggtgggcatgcatgggttgcttt |
355 |
Q |
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||||||||||| ||||||||| |||| ||| ||||||| || |||||||| |||||| ||||||||| |
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| T |
52822457 |
aaaagactccacttccactcttagtgtcattattgcagctgagttggtggggatgcataggttgcttt |
52822524 |
T |
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