View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1913_low_17 (Length: 435)

Name: NF1913_low_17
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1913_low_17
NF1913_low_17
[»] chr6 (21 HSPs)
chr6 (1-387)||(8850454-8850840)
chr6 (177-257)||(28112172-28112252)
chr6 (232-358)||(12988432-12988557)
chr6 (177-270)||(31071941-31072033)
chr6 (180-260)||(6512892-6512972)
chr6 (177-257)||(28108196-28108276)
chr6 (225-257)||(2378914-2378946)
chr6 (225-257)||(3597189-3597221)
chr6 (225-257)||(11401941-11401973)
chr6 (225-257)||(13004873-13004905)
chr6 (225-257)||(26942842-26942874)
chr6 (225-257)||(28665671-28665703)
chr6 (225-257)||(30655128-30655160)
chr6 (180-255)||(2845941-2846016)
chr6 (225-256)||(5259621-5259652)
chr6 (232-358)||(13021561-13021686)
chr6 (227-257)||(11247448-11247478)
chr6 (225-257)||(10289657-10289689)
chr6 (225-257)||(11126103-11126135)
chr6 (225-257)||(11188323-11188355)
chr6 (225-257)||(22561571-22561603)
[»] chr3 (41 HSPs)
chr3 (2-358)||(27298756-27299118)
chr3 (125-358)||(27308315-27308546)
chr3 (167-343)||(27308887-27309063)
chr3 (76-278)||(8099174-8099373)
chr3 (177-358)||(18542270-18542452)
chr3 (232-358)||(11636608-11636733)
chr3 (225-361)||(22360214-22360349)
chr3 (177-257)||(35751174-35751254)
chr3 (225-260)||(29344266-29344301)
chr3 (225-358)||(45896148-45896281)
chr3 (180-361)||(22993989-22994168)
chr3 (204-257)||(7486317-7486370)
chr3 (224-257)||(27091661-27091694)
chr3 (204-257)||(30690482-30690535)
chr3 (177-257)||(47051215-47051295)
chr3 (225-257)||(2873332-2873364)
chr3 (225-257)||(3840284-3840316)
chr3 (225-257)||(11190294-11190326)
chr3 (225-257)||(20729041-20729073)
chr3 (225-257)||(24125267-24125299)
chr3 (225-257)||(24128544-24128576)
chr3 (225-257)||(25584455-25584487)
chr3 (225-257)||(32287718-32287750)
chr3 (225-257)||(41976783-41976815)
chr3 (225-257)||(43926603-43926635)
chr3 (225-257)||(47054693-47054725)
chr3 (225-257)||(50461943-50461975)
chr3 (225-257)||(54723509-54723541)
chr3 (356-392)||(54834164-54834200)
chr3 (204-257)||(30220403-30220456)
chr3 (356-386)||(33389408-33389438)
chr3 (104-153)||(6030457-6030506)
chr3 (225-361)||(22370117-22370252)
chr3 (287-347)||(282495-282555)
chr3 (225-257)||(17040416-17040448)
chr3 (225-257)||(19301899-19301931)
chr3 (225-257)||(19305083-19305115)
chr3 (225-257)||(22783360-22783392)
chr3 (225-257)||(22787724-22787756)
chr3 (225-257)||(28008464-28008496)
chr3 (225-257)||(52309952-52309984)
[»] scaffold0187 (1 HSPs)
scaffold0187 (82-347)||(31249-31514)
[»] chr1 (22 HSPs)
chr1 (82-347)||(37907563-37907828)
chr1 (177-347)||(7635281-7635451)
chr1 (177-358)||(27332077-27332258)
chr1 (225-347)||(34066758-34066880)
chr1 (204-357)||(34732667-34732819)
chr1 (177-271)||(6071348-6071441)
chr1 (177-257)||(27536693-27536773)
chr1 (356-392)||(31697347-31697383)
chr1 (356-392)||(50124389-50124425)
chr1 (225-257)||(20398537-20398569)
chr1 (225-257)||(21018873-21018905)
chr1 (225-257)||(23022331-23022363)
chr1 (225-257)||(28110741-28110773)
chr1 (225-257)||(31204522-31204554)
chr1 (225-257)||(37184271-37184303)
chr1 (225-257)||(41058709-41058741)
chr1 (225-257)||(45961152-45961184)
chr1 (356-387)||(50123939-50123970)
chr1 (356-386)||(24509250-24509280)
chr1 (227-257)||(45941102-45941132)
chr1 (356-386)||(52750389-52750419)
chr1 (225-257)||(11668433-11668465)
[»] scaffold0034 (1 HSPs)
scaffold0034 (81-358)||(48709-48986)
[»] chr2 (31 HSPs)
chr2 (86-359)||(35521671-35521941)
chr2 (353-392)||(8892843-8892882)
chr2 (94-177)||(11187611-11187694)
chr2 (204-346)||(22630486-22630627)
chr2 (177-270)||(31427938-31428030)
chr2 (177-257)||(9966712-9966792)
chr2 (177-257)||(33310283-33310363)
chr2 (177-257)||(45453491-45453571)
chr2 (177-257)||(45456778-45456858)
chr2 (353-392)||(12602376-12602415)
chr2 (204-257)||(43723345-43723398)
chr2 (225-257)||(8888300-8888332)
chr2 (225-257)||(9185832-9185864)
chr2 (225-257)||(9189061-9189093)
chr2 (356-392)||(10708363-10708399)
chr2 (225-257)||(11348304-11348336)
chr2 (225-257)||(13972302-13972334)
chr2 (225-257)||(22020733-22020765)
chr2 (225-257)||(25960097-25960129)
chr2 (225-257)||(27266453-27266485)
chr2 (225-257)||(30190001-30190033)
chr2 (225-257)||(38015183-38015215)
chr2 (225-257)||(40781137-40781169)
chr2 (225-257)||(42369119-42369151)
chr2 (211-278)||(6298117-6298183)
chr2 (227-257)||(5105393-5105423)
chr2 (224-254)||(24234759-24234789)
chr2 (177-251)||(31430104-31430178)
chr2 (227-257)||(43208298-43208328)
chr2 (224-257)||(24238031-24238064)
chr2 (225-253)||(37280089-37280117)
[»] chr5 (26 HSPs)
chr5 (194-357)||(563530-563692)
chr5 (170-347)||(31575045-31575222)
chr5 (262-358)||(18765947-18766044)
chr5 (238-358)||(21914818-21914937)
chr5 (177-257)||(17664187-17664267)
chr5 (353-392)||(13824428-13824467)
chr5 (353-392)||(24041971-24042010)
chr5 (82-171)||(18766058-18766147)
chr5 (177-257)||(7624737-7624817)
chr5 (177-257)||(20055409-20055489)
chr5 (356-392)||(38385102-38385138)
chr5 (225-358)||(41877071-41877204)
chr5 (204-257)||(26896011-26896064)
chr5 (204-257)||(26753109-26753162)
chr5 (225-257)||(7270699-7270731)
chr5 (225-257)||(14016546-14016578)
chr5 (225-257)||(18952376-18952408)
chr5 (225-257)||(22129948-22129980)
chr5 (225-257)||(30066025-30066057)
chr5 (225-257)||(33551804-33551836)
chr5 (225-257)||(34831446-34831478)
chr5 (225-257)||(41306934-41306966)
chr5 (225-260)||(18239900-18239935)
chr5 (356-386)||(38385592-38385622)
chr5 (225-257)||(4099929-4099961)
chr5 (225-257)||(18032141-18032173)
[»] chr7 (24 HSPs)
chr7 (90-358)||(24917731-24917998)
chr7 (92-357)||(2090144-2090408)
chr7 (177-257)||(14683856-14683936)
chr7 (177-270)||(6603080-6603172)
chr7 (225-358)||(7227197-7227330)
chr7 (356-426)||(14682782-14682852)
chr7 (225-280)||(18562923-18562977)
chr7 (179-257)||(11398438-11398516)
chr7 (225-257)||(9405927-9405959)
chr7 (225-257)||(9865139-9865171)
chr7 (225-257)||(17730484-17730516)
chr7 (356-392)||(30474955-30474991)
chr7 (356-387)||(30474514-30474545)
chr7 (177-271)||(13842262-13842355)
chr7 (356-390)||(14682127-14682161)
chr7 (356-390)||(16956160-16956194)
chr7 (225-270)||(16165418-16165462)
chr7 (356-389)||(25443234-25443267)
chr7 (225-270)||(48645144-48645188)
chr7 (225-257)||(4596421-4596453)
chr7 (225-257)||(4695194-4695226)
chr7 (356-388)||(17238427-17238459)
chr7 (225-257)||(23225318-23225350)
chr7 (225-257)||(23234471-23234503)
[»] scaffold0233 (1 HSPs)
scaffold0233 (180-358)||(9575-9753)
[»] scaffold0045 (1 HSPs)
scaffold0045 (177-257)||(89404-89484)
[»] chr8 (12 HSPs)
chr8 (170-257)||(7944352-7944439)
chr8 (177-257)||(36711063-36711143)
chr8 (225-270)||(22174319-22174363)
chr8 (225-257)||(12582688-12582720)
chr8 (225-257)||(16953456-16953488)
chr8 (225-257)||(18824802-18824834)
chr8 (225-257)||(18826295-18826327)
chr8 (204-257)||(2560248-2560301)
chr8 (225-257)||(5614135-5614167)
chr8 (225-257)||(5980720-5980752)
chr8 (225-257)||(30784610-30784642)
chr8 (225-253)||(38248811-38248839)
[»] scaffold0002 (1 HSPs)
scaffold0002 (180-257)||(118854-118931)
[»] chr4 (35 HSPs)
chr4 (225-361)||(34018085-34018220)
chr4 (177-257)||(15405492-15405572)
chr4 (177-257)||(56195161-56195241)
chr4 (225-361)||(27691447-27691583)
chr4 (300-358)||(37740069-37740126)
chr4 (204-257)||(15436877-15436930)
chr4 (300-361)||(33493998-33494059)
chr4 (177-270)||(33926601-33926693)
chr4 (225-270)||(34320313-34320357)
chr4 (356-389)||(44183609-44183642)
chr4 (225-270)||(44809351-44809395)
chr4 (177-270)||(46955874-46955966)
chr4 (356-389)||(50282721-50282754)
chr4 (225-257)||(15163874-15163906)
chr4 (204-256)||(15430264-15430316)
chr4 (225-257)||(19820410-19820442)
chr4 (225-257)||(19827172-19827204)
chr4 (225-257)||(24150354-24150386)
chr4 (225-257)||(27677462-27677494)
chr4 (225-257)||(29324507-29324539)
chr4 (225-257)||(38283896-38283928)
chr4 (225-257)||(39501330-39501362)
chr4 (225-257)||(40903491-40903523)
chr4 (225-257)||(44164465-44164497)
chr4 (356-392)||(45044604-45044640)
chr4 (225-257)||(48637187-48637219)
chr4 (225-257)||(52006938-52006970)
chr4 (225-257)||(52531343-52531375)
chr4 (225-257)||(53094189-53094221)
chr4 (226-257)||(8877909-8877940)
chr4 (227-257)||(48415937-48415967)
chr4 (225-255)||(56198535-56198565)
chr4 (180-257)||(8448950-8449027)
chr4 (204-253)||(48014459-48014508)
chr4 (225-257)||(12782587-12782619)
[»] scaffold1684 (1 HSPs)
scaffold1684 (177-257)||(48-128)
[»] scaffold0250 (1 HSPs)
scaffold0250 (225-260)||(19078-19113)
[»] scaffold0757 (1 HSPs)
scaffold0757 (225-257)||(5035-5067)
[»] scaffold0427 (1 HSPs)
scaffold0427 (225-257)||(4196-4228)
[»] scaffold0024 (1 HSPs)
scaffold0024 (225-257)||(84923-84955)
[»] scaffold0520 (2 HSPs)
scaffold0520 (229-257)||(4387-4415)
scaffold0520 (229-257)||(8626-8654)
[»] scaffold0126 (1 HSPs)
scaffold0126 (225-257)||(82-114)


Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 8850840 - 8850454
Alignment:
Q  1 tttaggtttagagatggaattgtggcacgattactgagaattgtgacacgattttgatcacaggaatttcctattaacctgtttcagaaataagggttct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  8850840 tttaggtttagagatggaattgtggcacgattactgagaattgtgacacgattttgatcacatgaatttcctattaacctgttttagaaataagggttct 8850741  T
Q  101 taattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttatgtatgtgttaatgctttaa 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8850740 taattttggagatctaaaagacgattttgagagcacaagactgaagaggtggtcattccatccctctcatagtcaatttatgtatgtgttaatgctttaa 8850641  T
Q  201 ttaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacctgtttgaaatatatggctat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  8850640 ttaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttgaagatgaatctgatgtaacctgtttgaaacatatggctat 8850541  T
Q  301 gaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatgtttatagatttgatgaagatgatgatgaa 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8850540 gaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatatttatagatttgatgaagatgatgatgaa 8850454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 28112252 - 28112172
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||||||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  28112252 tttatgtatgttttaattctttaattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 28112172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 232 - 358
Target Start/End: Complemental strand, 12988557 - 12988432
Alignment:
Q  232 gtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatattaatcta 330  Q
    |||||||||||||||||||||||||| | ||||||| |||||||||| |||  |||||  || | ||| |||| |||||||  || ||||||| ||||||    
T  12988557 gtagctaaatctcttagagattaggtct-gagatgattctgatgtaaccctaattgaaccatgttgctgtgaagctctatt-attgtgaatatcaatcta 12988460  T
Q  331 gttttattcaattcaatagtttttaatg 358  Q
    |||||||||||||||||| || ||||||    
T  12988459 gttttattcaattcaatatttcttaatg 12988432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 31071941 - 31072033
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatc 270  Q
    ||||||||||| ||||| |||  ||| ||||||||||||||||     ||||||||||||||||||||||||||||||||| | ||||||||||    
T  31071941 tttatgtatgttttaattcttccatttattatgttatttgtaaactcaattatgagtagctaaatctcttagagattaggtct-gagatgaatc 31072033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 6512892 - 6512972
Alignment:
Q  180 atgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttg 260  Q
    |||||||| ||||| || | ||| |||||| |||||||||     ||||||||||||||||||||||||||||||||||||    
T  6512892 atgtatgttttaattctattattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggtttg 6512972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 28108276 - 28108196
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaat-tcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||| ||| |||||| |||||||||  ||| ||||||||||||||||||||||| | |||||||    
T  28108276 tttatgtatgttttaattctttcattgattatgctatttgtaaactcg-attatgagtagctaaatctcttatatattaggt 28108196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 2378914 - 2378946
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  2378914 attatgagtagctaaatctcttagagattaggt 2378946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 3597221 - 3597189
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  3597221 attatgagtagctaaatctcttagagattaggt 3597189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 11401941 - 11401973
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  11401941 attatgagtagctaaatctcttagagattaggt 11401973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 13004873 - 13004905
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  13004873 attatgagtagctaaatctcttagagattaggt 13004905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 26942874 - 26942842
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  26942874 attatgagtagctaaatctcttagagattaggt 26942842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 28665703 - 28665671
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  28665703 attatgagtagctaaatctcttagagattaggt 28665671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 30655128 - 30655160
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  30655128 attatgagtagctaaatctcttagagattaggt 30655160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 2845941 - 2846016
Alignment:
Q  180 atgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattag 255  Q
    |||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||    
T  2845941 atgtatgttttaattcttatattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattag 2846016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 5259621 - 5259652
Alignment:
Q  225 attatgagtagctaaatctcttagagattagg 256  Q
    ||||||||||||||||||||||||||||||||    
T  5259621 attatgagtagctaaatctcttagagattagg 5259652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 358
Target Start/End: Complemental strand, 13021686 - 13021561
Alignment:
Q  232 gtagctaaatctcttagagattaggtttggagatgaatctgatgtaacc-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatcta 330  Q
    |||||||||||||||||||  ||||| || |||||| |||||||||||| |  |||||  || | | | |||| |||||||  || ||||||| ||||||    
T  13021686 gtagctaaatctcttagaggataggtctg-agatgattctgatgtaaccctaattgaaccatgttgttgtgaagctctatta-ttgtgaatatcaatcta 13021589  T
Q  331 gttttattcaattcaatagtttttaatg 358  Q
    |||||||||||||||||| || ||||||    
T  13021588 gttttattcaattcaatatttcttaatg 13021561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 11247448 - 11247478
Alignment:
Q  227 tatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||    
T  11247448 tatgagtagctaaatctcttagagattaggt 11247478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 10289657 - 10289689
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||| ||||||||||||||||||||||    
T  10289657 attatgagtaactaaatctcttagagattaggt 10289689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 11126135 - 11126103
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||| ||||||||||||||||||||||||||    
T  11126135 attatgggtagctaaatctcttagagattaggt 11126103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 11188355 - 11188323
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||| ||||    
T  11188355 attatgagtagctaaatctcttagagatcaggt 11188323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 22561603 - 22561571
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||||||| |||||||||||||    
T  22561603 attatgagtagctaaatcttttagagattaggt 22561571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 6e-75; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 2 - 358
Target Start/End: Complemental strand, 27299118 - 27298756
Alignment:
Q  2 ttaggtttagagatggaattgtggcacgattactgagaattgtgacacgattttgatcacaggaatttcctatt-------aacctgtttcagaaataag 94  Q
    |||||||||||| || || |||||||||||||||||| ||  ||||||||||||  |||||  |||||||||||       ||||||||||||||| |||    
T  27299118 ttaggtttagagctgaaaatgtggcacgattactgaggatcatgacacgatttttgtcacat-aatttcctatttaagctaaacctgtttcagaaacaag 27299020  T
Q  95 ggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttatgtatgtgttaatg 194  Q
    |||||| |||||||||||| | || |  | |||| |||||| ||||||||||||||||||||||||||  ||||||||||| |||| |||||| || |||    
T  27299019 ggttctgaattttggagatttgaagtgtggtttttagagcagaagactgaagaggtggtcattccatcaaactcatagtcagtttacgtatgtttttatg 27298920  T
Q  195 ctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatata 293  Q
    ||| |||| || ||| |||||||||| | ||||| |||||||||||| ||||||||||||||| | ||||||||||||| |||| | ||||||||| ||     
T  27298919 cttcaatttatgatggtatttgtaatccatattacgagtagctaaatgtcttagagattaggtct-gagatgaatctgaagtaatcatgtttgaaacatg 27298821  T
Q  294 tggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 358  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||    
T  27298820 tggctgtgaaactctattgcttgtgaatatcaatctagttttattcaattcaattgttcttaatg 27298756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 125 - 358
Target Start/End: Complemental strand, 27308546 - 27308315
Alignment:
Q  125 ttttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttatgtatgtgttaatgctttaattaattatgttatttgtaattcgt 224  Q
    |||| |||||| |||||||||||||||| |||||||||||  ||||||||  ||||||||||| || |||||| ||  | | |||||||||| ||| | |    
T  27308546 ttttcagagcagaagactgaagaggtggccattccatccc--tcatagtcggtttatgtatgtttttatgcttcaacgattgatgttatttgcaatccat 27308449  T
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacct-gtttgaaatatatggctatgaaactctattgcttatgaatat 323  Q
    |||||| |||||||||||||||||||||||||| || |||||||||||| |||| || |||| ||| || ||||||||||| |||||||||| |||||||    
T  27308448 attatgtgtagctaaatctcttagagattaggtctg-agatgaatctgaagtaatcttgtttaaaacatgtggctatgaaaatctattgcttgtgaatat 27308350  T
Q  324 taatctagttttattcaattcaatagtttttaatg 358  Q
     ||||||||||||||||||||||| ||| ||||||    
T  27308349 caatctagttttattcaattcaattgttcttaatg 27308315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 167 - 343
Target Start/End: Complemental strand, 27309063 - 27308887
Alignment:
Q  167 tcatagtcaatttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatg 266  Q
    ||||||| | ||||||||||| || |||||| || | || |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  27309063 tcatagttagtttatgtatgtttttatgcttcaactgatgatgttatttgtaattcatattatgagtagctaaatctcttagagattaggtct-gagatg 27308965  T
Q  267 aatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaatt 343  Q
    ||||||| |||| | ||||||||| || ||| | |||||||||||||||| ||||||| |||||| ||||||||||||    
T  27308964 aatctgaagtaatcttgtttgaaacatttggttgtgaaactctattgcttgtgaatatcaatctatttttattcaatt 27308887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 76 - 278
Target Start/End: Complemental strand, 8099373 - 8099174
Alignment:
Q  76 aacctgtttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtca 175  Q
    ||||||||||| ||| ||||||||| ||||| ||  |||| ||  ||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||    
T  8099373 aacctgtttcaaaaacaagggttctgaatttagggtatctgaagcacgattttgagagcataagattgaagaggtggtcagtccatccaactcatagtca 8099274  T
Q  176 atttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatg 275  Q
      || ||||||| |||| ||||  | | ||||||||||||||||||    |||| ||||| ||||||  |||| |||| | | ||||||||||| |||||    
T  8099273 --ttttgtatgttttaaagcttagaatgattatgttatttgtaatttcagttatcagtagttaaatc-attagtgattggatctggagatgaatatgatg 8099177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 177 - 358
Target Start/End: Original strand, 18542270 - 18542452
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgt 276  Q
    ||||||||||| ||||| |||  ||| |||||| ||||||||| |   ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  18542270 tttatgtatgttttaattcttccattgattatgctatttgtaaattcaattatgagtagctaaatcttttagagattaggttt-gagatgaatatgatgt 18542368  T
Q  277 aacctgtttgaaatatatggctatgaaactctattgc--ttatgaatattaatctagttttattcaattcaatagtttttaatg 358  Q
    |  |||||||||   | |   | |||||||||||| |   ||||||||| ||| ||||||||||||||||||| ||| ||||||    
T  18542369 actctgtttgaaccttgttaatgtgaaactctatttcatatatgaatatcaatatagttttattcaattcaattgttcttaatg 18542452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 358
Target Start/End: Original strand, 11636608 - 11636733
Alignment:
Q  232 gtagctaaatctcttagagattaggtttggagatgaatctgatgtaacc-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatcta 330  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||| |  |||||  || | ||| ||||||||||||  || ||||||| ||||||    
T  11636608 gtagctaaatctcttagagattaggtctg-agatgattctgatgtaaccctaattgaaccatgttgctgtgaaactctatta-ttgtgaatatcaatcta 11636705  T
Q  331 gttttattcaattcaatagtttttaatg 358  Q
    ||||||||||||||||| ||| ||||||    
T  11636706 gttttattcaattcaattgttcttaatg 11636733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 361
Target Start/End: Original strand, 22360214 - 22360349
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 323  Q
    ||||||||||||||||||||||||||||||||| | ||||||| | || ||||| |||  || ||| || | | | |||||||| ||| ||| |||||||    
T  22360214 attatgagtagctaaatctcttagagattaggtct-gagatgattatg-tgtaaccctaatttaaacatgttgatgtgaaactcaatttcttgtgaatat 22360311  T
Q  324 taatctagttttattcaattcaatagtttttaatgttt 361  Q
     |||||| || ||||||||||||| ||| |||||||||    
T  22360312 caatctatttatattcaattcaattgttcttaatgttt 22360349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 35751174 - 35751254
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  35751174 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 35751254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 29344301 - 29344266
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttg 260  Q
    ||||||||||||||||||||||||||||||||||||    
T  29344301 attatgagtagctaaatctcttagagattaggtttg 29344266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 358
Target Start/End: Original strand, 45896148 - 45896281
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 323  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||  ||||| |||  |||||  |||| ||| ||||||||||||  || |||||      
T  45896148 attatgagtagctaaatctcttagagattaggtct-gagatgattct-ttgtaaccctaattgaaccatattgctgtgaaactctatttattgtgaatga 45896245  T
Q  324 taatctag-ttttattcaattcaatagtttttaatg 358  Q
     ||||||| |||||||||||||||| ||| ||||||    
T  45896246 caatctagtttttattcaattcaattgttcttaatg 45896281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 361
Target Start/End: Complemental strand, 22994168 - 22993989
Alignment:
Q  180 atgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaac 279  Q
    |||||||| ||||| |||  ||| | |||| ||||||||| ||  ||||||||||||||||||||| ||||||||||| || |||||| | || || |||    
T  22994168 atgtatgttttaattcttccattgaatatgctatttgtaactca-attatgagtagctaaatctctcagagattaggtctg-agatgattatg-tgaaac 22994072  T
Q  280 c-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatgttt 361  Q
    | |  || ||| || | ||| | ||||||||||  || ||||||| |||||||||||||||||||||||  || |||||||||    
T  22994071 cgtaatttaaacatgttgctgtaaaactctatttattgtgaatatcaatctagttttattcaattcaatttttcttaatgttt 22993989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 7486317 - 7486370
Alignment:
Q  204 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  7486317 attatgttatttgtaaactcaattatgagtagctaaatctcttagagattaggt 7486370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 27091661 - 27091694
Alignment:
Q  224 tattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||||||||||||||||||||||    
T  27091661 tattatgagtagctaaatctcttagagattaggt 27091694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 30690482 - 30690535
Alignment:
Q  204 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    |||||| ||||||||| |   |||||||||||||||||||||||||||||||||    
T  30690482 attatgctatttgtaaattcaattatgagtagctaaatctcttagagattaggt 30690535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 47051215 - 47051295
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgt-aattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||  ||| |||||| ||||||| || ||  |||||||||||||||||||||||||||||||||    
T  47051215 tttatgtatgttttaattcttccattgattatgctatttgtgaactca-attatgagtagctaaatctcttagagattaggt 47051295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 2873332 - 2873364
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  2873332 attatgagtagctaaatctcttagagattaggt 2873364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 3840284 - 3840316
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  3840284 attatgagtagctaaatctcttagagattaggt 3840316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 11190294 - 11190326
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  11190294 attatgagtagctaaatctcttagagattaggt 11190326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 20729073 - 20729041
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  20729073 attatgagtagctaaatctcttagagattaggt 20729041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 24125267 - 24125299
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  24125267 attatgagtagctaaatctcttagagattaggt 24125299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 24128544 - 24128576
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  24128544 attatgagtagctaaatctcttagagattaggt 24128576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 25584455 - 25584487
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  25584455 attatgagtagctaaatctcttagagattaggt 25584487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 32287750 - 32287718
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  32287750 attatgagtagctaaatctcttagagattaggt 32287718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 41976783 - 41976815
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  41976783 attatgagtagctaaatctcttagagattaggt 41976815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 43926603 - 43926635
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  43926603 attatgagtagctaaatctcttagagattaggt 43926635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 47054693 - 47054725
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  47054693 attatgagtagctaaatctcttagagattaggt 47054725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 50461975 - 50461943
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  50461975 attatgagtagctaaatctcttagagattaggt 50461943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 54723509 - 54723541
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  54723509 attatgagtagctaaatctcttagagattaggt 54723541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 54834200 - 54834164
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaaaga 392  Q
    ||||||||||||||||||||||| |||||||||||||    
T  54834200 atgtttatagatttgatgaagataatgatgaaaaaga 54834164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 30220456 - 30220403
Alignment:
Q  204 attatgttatttgtaat-tcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||| |||||||    
T  30220456 attatgttatttgtaaactcg-attatgagtagctaaatctcttagatattaggt 30220403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 386
Target Start/End: Complemental strand, 33389438 - 33389408
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatga 386  Q
    |||||||||||||||||||||||||||||||    
T  33389438 atgtttatagatttgatgaagatgatgatga 33389408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 6030457 - 6030506
Alignment:
Q  104 ttttggagatctaaaatacgattttgagagcacaagactgaagaggtggt 153  Q
    |||||||||||||||| ||||  ||||||||| |||||| ||||||||||    
T  6030457 ttttggagatctaaaacacgaacttgagagcaaaagactaaagaggtggt 6030506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 361
Target Start/End: Original strand, 22370117 - 22370252
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 323  Q
    |||||||||||| |||||||||||||||||||| | ||||||| | || ||||| |||  || ||| || | | | |||||||| ||| ||  |||||||    
T  22370117 attatgagtagcaaaatctcttagagattaggtct-gagatgattatg-tgtaaccctaatttaaacatgttgttgtgaaactcaatttctcgtgaatat 22370214  T
Q  324 taatctagttttattcaattcaatagtttttaatgttt 361  Q
     |||||| || ||||||||||||| ||| |||||||||    
T  22370215 caatctatttatattcaattcaattgttcttaatgttt 22370252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 282555 - 282495
Alignment:
Q  287 aaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaat 347  Q
    |||||| ||||  |||||||| |||| |||| | ||| |||||||||||||||||||||||    
T  282555 aaatatgtggccgtgaaactcaattgattataattataaatctagttttattcaattcaat 282495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 17040448 - 17040416
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| |||||||||||||||||||||    
T  17040448 attatgagtagttaaatctcttagagattaggt 17040416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 19301931 - 19301899
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||| |||||||||||||||||    
T  19301931 attatgagtagctaactctcttagagattaggt 19301899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 19305115 - 19305083
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||| |||||||||||||||||    
T  19305115 attatgagtagctaactctcttagagattaggt 19305083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 22783360 - 22783392
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||| |||||||||||||||||||||||||||    
T  22783360 attataagtagctaaatctcttagagattaggt 22783392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 22787724 - 22787756
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||| |||||||||||||||||||||||||||    
T  22787724 attataagtagctaaatctcttagagattaggt 22787756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 28008496 - 28008464
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||| ||||||    
T  28008496 attatgagtagctaaatctcttagagtttaggt 28008464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 52309984 - 52309952
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||||||||||||| |||||||    
T  52309984 attatgagtagctaaatctcttagatattaggt 52309952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 82 - 347
Target Start/End: Original strand, 31249 - 31514
Alignment:
Q  82 tttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttat 181  Q
    ||||||||||||||||||| ||||| |||||||| ||     |||||||||||| |||||||||||||||| |||||| ||| ||||||||||| |||||    
T  31249 tttcagaaataagggttctgaatttaggagatctgaagcgtaattttgagagcaaaagactgaagaggtggccattccttccaactcatagtcagtttat 31348  T
Q  182 gtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cc 280  Q
    |||||| || |||||| |||| ||  |||||||| |||| | ||  |||||||| ||||||||||||||||||||| | |||||||||||||||||| |     
T  31349 gtatgtttttatgcttcaattgatgttgttatttttaatccatacaatgagtagttaaatctcttagagattaggtct-gagatgaatctgatgtaatca 31447  T
Q  281 tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaat 347  Q
    ||||||||| || ||| | ||||||| |||||||||||||||| |||||||||||||||||||||||    
T  31448 tgtttgaaacatgtggttgtgaaactatattgcttatgaatatcaatctagttttattcaattcaat 31514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 82 - 347
Target Start/End: Complemental strand, 37907828 - 37907563
Alignment:
Q  82 tttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttat 181  Q
    ||||||||||||||||||| ||||| |||||||| ||     |||||||||||| |||||||||||||||| |||||| ||| ||||||||||| |||||    
T  37907828 tttcagaaataagggttctgaatttaggagatctgaagcgtaattttgagagcaaaagactgaagaggtggccattccttccaactcatagtcagtttat 37907729  T
Q  182 gtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cc 280  Q
    |||||| || |||||| |||| ||  |||||||| |||| | ||  |||||||| ||||||||||||||||||||| | |||||||||||||||||| |     
T  37907728 gtatgtttttatgcttcaattgatgttgttatttttaatccatacaatgagtagttaaatctcttagagattaggtct-gagatgaatctgatgtaatca 37907630  T
Q  281 tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaat 347  Q
    ||||||||| || ||| | ||||||| |||||||||||||||| |||||||||||||||||||||||    
T  37907629 tgtttgaaacatgtggttgtgaaactatattgcttatgaatatcaatctagttttattcaattcaat 37907563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 177 - 347
Target Start/End: Original strand, 7635281 - 7635451
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgt 276  Q
    ||||||||||| ||||| |||| ||| |||||| |||||||||     ||||||||||| ||||||||||||||||||||| | ||||||| ||||||||    
T  7635281 tttatgtatgttttaattctttcattgattatgctatttgtaaactcaattatgagtagttaaatctcttagagattaggtgt-gagatgattctgatgt 7635379  T
Q  277 aa-cctgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaat 347  Q
    || |||  || ||| || | | | |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  7635380 aaccctaatttaaacatgttgatgtgaaactctatttcttatgaatatcaatctagttttattcaattcaat 7635451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 177 - 358
Target Start/End: Complemental strand, 27332258 - 27332077
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgt 276  Q
    ||||||||||| ||||| |||| ||| |||||| ||| |||||     ||||||||||||||||||||||| ||||||||| || | |||| ||||||||    
T  27332258 tttatgtatgttttaattctttcattgattatgctatctgtaaactcaattatgagtagctaaatctcttaaagattaggtctgaa-atgattctgatgt 27332160  T
Q  277 aacc-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 358  Q
    |||| |  || ||| || | ||||||||||| |||| ||| ||||||| ||||||||||||||||||||||| ||| ||||||    
T  27332159 aaccctaatttaaacatgttgctatgaaactttatttcttgtgaatatcaatctagttttattcaattcaattgttattaatg 27332077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 347
Target Start/End: Complemental strand, 34066880 - 34066758
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacc-tgtttgaaatatatggctatgaaactctattgcttatgaatat 323  Q
    ||||||||||||||||||||||||||||||||| || |||||| | |||||||||| |  || ||| || | | | |||||||||||| ||| |||||||    
T  34066880 attatgagtagctaaatctcttagagattaggtatg-agatgattttgatgtaaccctaatttaaacatgttgttgtgaaactctatttcttgtgaatat 34066782  T
Q  324 taatctagttttattcaattcaat 347  Q
     |||||||||||||||||||||||    
T  34066781 caatctagttttattcaattcaat 34066758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 357
Target Start/End: Complemental strand, 34732819 - 34732667
Alignment:
Q  204 attatgttatttgtaat-tcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacctgtttgaaatatatggctatga 302  Q
    ||||||||||||||||  ||| ||||||||||||||||||| ||||||||||||  | ||||||| |||| |||||||   ||||||||| | ||| |||    
T  34732819 attatgttatttgtaaactcg-attatgagtagctaaatctattagagattaggcct-gagatgattctg-tgtaaccctattgaaatatgttgctgtga 34732723  T
Q  303 aactctattgcttatgaatattaatctag-ttttattcaattcaatagtttttaat 357  Q
    ||||||||   || |||||  |||||||| |||||||||||||||| ||| |||||    
T  34732722 aactctatctattgtgaatgataatctagtttttattcaattcaattgttcttaat 34732667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 6071441 - 6071348
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatct 271  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     ||||||||||||||||||||||||||||||||| | |||||||||||    
T  6071441 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggtct-gagatgaatct 6071348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 27536773 - 27536693
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| |||||  ||| ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  27536773 tttatgtatgttttaattttttcattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 27536693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 31697383 - 31697347
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaaaga 392  Q
    |||||||||||||||||||||||||||||||||||||    
T  31697383 atgtttatagatttgatgaagatgatgatgaaaaaga 31697347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 50124389 - 50124425
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaaaga 392  Q
    |||||||||||||||||||||||||||||||||||||    
T  50124389 atgtttatagatttgatgaagatgatgatgaaaaaga 50124425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 20398537 - 20398569
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  20398537 attatgagtagctaaatctcttagagattaggt 20398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 21018905 - 21018873
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  21018905 attatgagtagctaaatctcttagagattaggt 21018873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 23022363 - 23022331
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  23022363 attatgagtagctaaatctcttagagattaggt 23022331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 28110741 - 28110773
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  28110741 attatgagtagctaaatctcttagagattaggt 28110773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 31204522 - 31204554
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  31204522 attatgagtagctaaatctcttagagattaggt 31204554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 37184303 - 37184271
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  37184303 attatgagtagctaaatctcttagagattaggt 37184271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 41058741 - 41058709
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  41058741 attatgagtagctaaatctcttagagattaggt 41058709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 45961184 - 45961152
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  45961184 attatgagtagctaaatctcttagagattaggt 45961152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 387
Target Start/End: Complemental strand, 50123970 - 50123939
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaa 387  Q
    ||||||||||||||||||||||||||||||||    
T  50123970 atgtttatagatttgatgaagatgatgatgaa 50123939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 386
Target Start/End: Original strand, 24509250 - 24509280
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatga 386  Q
    |||||||||||||||||||||||||||||||    
T  24509250 atgtttatagatttgatgaagatgatgatga 24509280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 45941102 - 45941132
Alignment:
Q  227 tatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||    
T  45941102 tatgagtagctaaatctcttagagattaggt 45941132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 386
Target Start/End: Complemental strand, 52750419 - 52750389
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatga 386  Q
    |||||||||||||||||||||||||||||||    
T  52750419 atgtttatagatttgatgaagatgatgatga 52750389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 11668465 - 11668433
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||| ||||||||||||||||||||||||||    
T  11668465 attatgtgtagctaaatctcttagagattaggt 11668433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 81 - 358
Target Start/End: Complemental strand, 48986 - 48709
Alignment:
Q  81 gtttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaattta 180  Q
    |||||||||| ||||||||  ||||||||||| | |||   | |||||||||||| |||||||||||||||| ||| |||||| |||| |||||| ||||    
T  48986 gtttcagaaacaagggttcgaaattttggagaccgaaagcgcaattttgagagcaaaagactgaagaggtggccatcccatccaactcgtagtcagttta 48887  T
Q  181 tgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaac- 279  Q
    ||||||| ||||| |||  ||| |||||| |||||||||||   ||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||     
T  48886 tgtatgttttaattcttccattgattatgctatttgtaattacaattatgagtggctaaatctcttagagattaggttt-gagatgaatctgatgttact 48788  T
Q  280 ctgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 358  Q
    ||| |||| | || |   | || ||||||||| | | ||||||| ||||||||||||||||||||||| ||| ||||||    
T  48787 ctggttgagacatgttaatgtgcaactctatttcatgtgaatatcaatctagttttattcaattcaattgttcttaatg 48709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 86 - 359
Target Start/End: Complemental strand, 35521941 - 35521671
Alignment:
Q  86 agaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttatgtat 185  Q
    |||| |||||||||  |||||||||||||| ||  ||||||||||||||| |  ||| ||| |||||||| ||||||| ||| |||||    || |||||    
T  35521941 agaagtaagggttcggaattttggagatctgaagcacgattttgagagcaaagaactaaagtggtggtcaatccatccaactaatagt----ttgtgtat 35521846  T
Q  186 gtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaac-ctgtt 284  Q
    || || |||||| |||| |||||| |||||||||||   ||||||||||||||||||| ||| ||||||||||  |||||||||||||||||||  ||||    
T  35521845 gtttttatgcttaaattgattatgctatttgtaatttcaattatgagtagctaaatctattaaagattaggttatgagatgaatctgatgtaactttgtt 35521746  T
Q  285 tgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatgt 359  Q
    ||||  || | | | |||||||||||| | | ||  ||| |||||||||||| |||||||||| ||| |||||||    
T  35521745 tgaaccatgttgttgtgaaactctatttcatgtgggtatcaatctagttttactcaattcaattgttcttaatgt 35521671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 8892843 - 8892882
Alignment:
Q  353 ttaatgtttatagatttgatgaagatgatgatgaaaaaga 392  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8892843 ttaatgtttatagatttgatgaagatgatgatgaaaaaga 8892882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 11187611 - 11187694
Alignment:
Q  94 gggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaat 177  Q
    ||||||| |||||||||||| | ||  | | |||||||||||||||||||||||||||| ||||||| |  |||||||||||||    
T  11187611 gggttctgaattttggagatttgaagcatgcttttgagagcacaagactgaagaggtggccattccaccaaactcatagtcaat 11187694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 346
Target Start/End: Original strand, 22630486 - 22630627
Alignment:
Q  204 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacctgtttgaaatatatggctatgaa 303  Q
    ||||||||||||||||     ||||||||||||||||||| |||||| |||||| | ||||||| ||| |||||||||  |||||| || | ||| ||||    
T  22630486 attatgttatttgtaaacaccattatgagtagctaaatctattagaggttaggtct-gagatgattct-atgtaacctaattgaaacatgttgctgtgaa 22630583  T
Q  304 actctattgcttatgaatattaatctag-ttttattcaattcaa 346  Q
    ||||||||  || |||||  |||||||| |||||||||||||||    
T  22630584 actctatttattgtgaatgataatctagtttttattcaattcaa 22630627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 31428030 - 31427938
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatc 270  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     ||||||||||||||||||||||||||||||||| | ||||||||||    
T  31428030 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggtct-gagatgaatc 31427938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 9966792 - 9966712
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||| | ||||| |||| ||| |||||||||| |||||     |||||||||||||||||||||||||||||||||    
T  9966792 tttatgtatattttaattctttcattgattatgttatatgtaaactcaattatgagtagctaaatctcttagagattaggt 9966712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 33310283 - 33310363
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| |||||  ||  ||| ||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  33310283 tttatgtatgttttaatttttccattgattatgttatttgtaaactcaattatgagtagctaaatctcttagagattaggt 33310363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 45453491 - 45453571
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  45453491 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 45453571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 45456778 - 45456858
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  45456778 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 45456858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 12602376 - 12602415
Alignment:
Q  353 ttaatgtttatagatttgatgaagatgatgatgaaaaaga 392  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  12602376 ttaatgtttatagatttgatgaagataatgatgaaaaaga 12602415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 43723345 - 43723398
Alignment:
Q  204 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    |||||| ||||||||| |   |||||||||||||||||||||||||||||||||    
T  43723345 attatgctatttgtaaattcaattatgagtagctaaatctcttagagattaggt 43723398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 8888300 - 8888332
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  8888300 attatgagtagctaaatctcttagagattaggt 8888332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 9185864 - 9185832
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  9185864 attatgagtagctaaatctcttagagattaggt 9185832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 9189093 - 9189061
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  9189093 attatgagtagctaaatctcttagagattaggt 9189061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 10708399 - 10708363
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaaaga 392  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10708399 atgtttatagatttgatgaagattatgatgaaaaaga 10708363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 11348336 - 11348304
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  11348336 attatgagtagctaaatctcttagagattaggt 11348304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 13972334 - 13972302
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  13972334 attatgagtagctaaatctcttagagattaggt 13972302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 22020733 - 22020765
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  22020733 attatgagtagctaaatctcttagagattaggt 22020765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 25960129 - 25960097
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  25960129 attatgagtagctaaatctcttagagattaggt 25960097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 27266453 - 27266485
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  27266453 attatgagtagctaaatctcttagagattaggt 27266485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 30190001 - 30190033
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  30190001 attatgagtagctaaatctcttagagattaggt 30190033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 38015183 - 38015215
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  38015183 attatgagtagctaaatctcttagagattaggt 38015215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 40781137 - 40781169
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  40781137 attatgagtagctaaatctcttagagattaggt 40781169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 42369151 - 42369119
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  42369151 attatgagtagctaaatctcttagagattaggt 42369119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 6298117 - 6298183
Alignment:
Q  211 tatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa 278  Q
    |||||||||||| |||||||||||||||||| || ||| ||||| || | ||||||||| ||||||||    
T  6298117 tatttgtaattcctattatgagtagctaaat-tcctagggattatgtctagagatgaatgtgatgtaa 6298183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 5105393 - 5105423
Alignment:
Q  227 tatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||    
T  5105393 tatgagtagctaaatctcttagagattaggt 5105423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 254
Target Start/End: Original strand, 24234759 - 24234789
Alignment:
Q  224 tattatgagtagctaaatctcttagagatta 254  Q
    |||||||||||||||||||||||||||||||    
T  24234759 tattatgagtagctaaatctcttagagatta 24234789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 31430178 - 31430104
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagaga 251  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||    
T  31430178 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagaga 31430104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 43208328 - 43208298
Alignment:
Q  227 tatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||    
T  43208328 tatgagtagctaaatctcttagagattaggt 43208298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 24238031 - 24238064
Alignment:
Q  224 tattatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||| |||||||||||||    
T  24238031 tattatgagtagctaaatcttttagagattaggt 24238064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 37280117 - 37280089
Alignment:
Q  225 attatgagtagctaaatctcttagagatt 253  Q
    |||||||||||||||||||||||||||||    
T  37280117 attatgagtagctaaatctcttagagatt 37280089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 194 - 357
Target Start/End: Complemental strand, 563692 - 563530
Alignment:
Q  194 gctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacctgtttgaaatata 293  Q
    |||| |||| ||||||||||||||||||   |||||||||| ||||||| || |||||||||||||||||| || |||||||||  |||||||||| ||     
T  563692 gcttcaattgattatgttatttgtaattttcattatgagtatctaaatcact-agagattaggtttggagacgattctgatgtagactgtttgaaacatg 563594  T
Q  294 tggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaat 357  Q
    ||| | |||||||||||||| | ||||||||||| ||||||||||||||| ||| ||| |||||    
T  563593 tggttgtgaaactctattgcatgtgaatattaatatagttttattcaatttaattgttcttaat 563530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 347
Target Start/End: Original strand, 31575045 - 31575222
Alignment:
Q  170 tagtcaatttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaat 269  Q
    |||||||| ||||||||| |||||  ||  ||| ||||||||||||||||||   ||||||||| | ||||||||||| ||| ||||| || ||||||||    
T  31575045 tagtcaatatatgtatgttttaattattccattgattatgttatttgtaatttcaattatgagttgttaaatctcttaaagagtaggtctg-agatgaat 31575143  T
Q  270 ctgatgtaacc-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaat 347  Q
    ||||||||||| | ||||||  || | | | |||||||||||| | | ||||||| |||||||||||||| ||||||||    
T  31575144 ctgatgtaaccctatttgaaccatgttgttgtgaaactctatttcatgtgaatatcaatctagttttatttaattcaat 31575222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 18766044 - 18765947
Alignment:
Q  262 agatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 358  Q
    |||||||||||| |||| ||| ||||||| || ||||| ||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||||    
T  18766044 agatgaatctgaggtaatcctatttgaaacatgtggctgtgaaactttattgcttgtgcatattaatctagttttattcaattcaattgtttttaatg 18765947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 21914818 - 21914937
Alignment:
Q  238 aaatctcttagagattaggtttggagatgaatctgatgtaacc-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagtttta 336  Q
    |||||||||||||||||||| || |||||| |||||||||||| |  |||||  || | ||||||||||||||||  || |||| || ||||||||||||    
T  21914818 aaatctcttagagattaggtctg-agatgattctgatgtaaccctaattgaaccatgttgctatgaaactctatta-ttgtgaaaatcaatctagtttta 21914915  T
Q  337 ttcaattcaatagtttttaatg 358  Q
    ||||||||||| ||| ||||||    
T  21914916 ttcaattcaattgttcttaatg 21914937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 17664187 - 17664267
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||| ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  17664187 tttatgtatgttttaattctttcattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 17664267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 13824428 - 13824467
Alignment:
Q  353 ttaatgtttatagatttgatgaagatgatgatgaaaaaga 392  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13824428 ttaatgtttatagatttgatgaagatgatgatgaaaaaga 13824467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 392
Target Start/End: Complemental strand, 24042010 - 24041971
Alignment:
Q  353 ttaatgtttatagatttgatgaagatgatgatgaaaaaga 392  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24042010 ttaatgtttatagatttgatgaagatgatgatgaaaaaga 24041971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 18766147 - 18766058
Alignment:
Q  82 tttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcata 171  Q
    ||||||||| ||||||| | |||||||||||| | ||   | |||||||||||| |||||||||||||||| ||| |||||| |||||||    
T  18766147 tttcagaaacaagggttttgaattttggagatatgaagcgcaattttgagagcagaagactgaagaggtggccatcccatccaactcata 18766058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 7624737 - 7624817
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  7624737 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 7624817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 20055409 - 20055489
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||| ||| |||||  |||||||||     |||||||||||||||||||||||||||||||||    
T  20055409 tttatgtatgttttaattctttcattgattattctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 20055489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 38385138 - 38385102
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaaaga 392  Q
    |||||||||||||||||||||||||||||||||||||    
T  38385138 atgtttatagatttgatgaagatgatgatgaaaaaga 38385102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 358
Target Start/End: Complemental strand, 41877204 - 41877071
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 323  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||  ||||| |||  |||||  || | ||| ||||||||||||  || |||||      
T  41877204 attatgagtagctaaatctcttagagattaggtct-gagatgattct-ttgtaaccctaattgaaccatgttgctgtgaaactctatttattgtgaatga 41877107  T
Q  324 taatctag-ttttattcaattcaatagtttttaatg 358  Q
     ||||||| |||||||||||||||| ||||||||||    
T  41877106 caatctagtttttattcaattcaattgtttttaatg 41877071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 26896064 - 26896011
Alignment:
Q  204 attatgttatttgtaat-tcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  26896064 attatgttatttgtaaactcg-attatgagtagctaaatctcttagagattaggt 26896011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 26753162 - 26753109
Alignment:
Q  204 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    |||||| ||||||||| |   |||||||||||||||||||||||||||||||||    
T  26753162 attatgatatttgtaaattcaattatgagtagctaaatctcttagagattaggt 26753109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 7270699 - 7270731
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  7270699 attatgagtagctaaatctcttagagattaggt 7270731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 14016578 - 14016546
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  14016578 attatgagtagctaaatctcttagagattaggt 14016546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 18952376 - 18952408
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  18952376 attatgagtagctaaatctcttagagattaggt 18952408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 22129948 - 22129980
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  22129948 attatgagtagctaaatctcttagagattaggt 22129980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 30066025 - 30066057
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  30066025 attatgagtagctaaatctcttagagattaggt 30066057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 33551804 - 33551836
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  33551804 attatgagtagctaaatctcttagagattaggt 33551836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 34831446 - 34831478
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  34831446 attatgagtagctaaatctcttagagattaggt 34831478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 41306966 - 41306934
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  41306966 attatgagtagctaaatctcttagagattaggt 41306934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 18239935 - 18239900
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttg 260  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18239935 attatgagtagttaaatctcttagagattaggtttg 18239900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 386
Target Start/End: Original strand, 38385592 - 38385622
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatga 386  Q
    |||||||||||||||||||||||||||||||    
T  38385592 atgtttatagatttgatgaagatgatgatga 38385622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 4099961 - 4099929
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| |||||||||||||||||||||    
T  4099961 attatgagtagataaatctcttagagattaggt 4099929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 18032141 - 18032173
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||||| |||||||||||||||||||||||||    
T  18032141 attatgaatagctaaatctcttagagattaggt 18032173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 90 - 358
Target Start/End: Original strand, 24917731 - 24917998
Alignment:
Q  90 ataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttatgtatgtgt 189  Q
    ||||||||| | |||||||||||| | ||  |||||||||||||   |||||| ||||||||||| |||||||| ||| |||||| || | ||||||| |    
T  24917731 ataagggttttgaattttggagatttgaagcacgattttgagagtggaagactaaagaggtggtc-ttccatccaacttatagtccatctttgtatgttt 24917829  T
Q  190 taatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgta-acctgtttgaa 288  Q
    |||||||| |  | |||||||||||  |||||   |||| |||| |||||||| |  | ||||||||| ||||||||| ||  ||||| || ||||||||    
T  24917830 taatgcttcagatgattatgttattactaattttcattacgagtggctaaatcacc-atagattaggtctggagatgattcgtatgtagacttgtttgaa 24917928  T
Q  289 atatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 358  Q
    |||| | ||| |||||||||||||| | ||||||||||| |||||||||||||| |||| ||| ||||||    
T  24917929 atatgtcgctgtgaaactctattgcatgtgaatattaatttagttttattcaatccaattgttcttaatg 24917998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 357
Target Start/End: Original strand, 2090144 - 2090408
Alignment:
Q  92 aagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttatgtatgtgtta 191  Q
    ||||||||| |||||||| ||||| ||  ||||||||||||| | |||||||||||||||| ||||||| |  |||||||||| ||   ||||| | |||    
T  2090144 aagggttctaaattttggcgatctgaagcacgattttgagagtataagactgaagaggtggccattccaccaaactcatagtcgatccttgtatatttta 2090243  T
Q  192 atgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgta-acctgtttgaaat 290  Q
    |||||| | || ||| ||||||||||||||   ||||||  ||||||||||  |||||||||| || |||||||||   |||||||  | ||||||||||    
T  2090244 atgcttcatttgattgtgttatttgtaattttcattatgtatagctaaatc-attagagattacgtctggagatgatcttgatgtaggcttgtttgaaat 2090342  T
Q  291 atatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaat 357  Q
    || ||| | |||||||||| ||  || || |||||||||||| |||||||||||||| ||| |||||    
T  2090343 atgtggttgtgaaactcta-tgtataagattattaatctagtcttattcaattcaattgttcttaat 2090408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 14683936 - 14683856
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||| ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  14683936 tttatgtatgttttaattcttttattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 14683856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 6603080 - 6603172
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatc 270  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     ||||||||||||||||||||||||||||||||| | ||||||||||    
T  6603080 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggtct-gagatgaatc 6603172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 358
Target Start/End: Original strand, 7227197 - 7227330
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 323  Q
    ||||||||||||||||||||||||||||||||| |  |||||| |||| ||||| |||  |||||| || | ||||||||||||||||  || |||||      
T  7227197 attatgagtagctaaatctcttagagattaggtct-aagatgattctg-tgtaaccctaattgaaacatgttgctatgaaactctatttattgtgaatga 7227294  T
Q  324 taatctag-ttttattcaattcaatagtttttaatg 358  Q
     ||| ||| |||||||||||||||| ||| ||||||    
T  7227295 caatttagtttttattcaattcaattgttcttaatg 7227330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 426
Target Start/End: Original strand, 14682782 - 14682852
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaaagannnnnnnnnctgggttagtgtgttgttgatgatg 426  Q
    ||||||||||||||||||||||| |||||||||||||         ||||||| |||||||||||||||||    
T  14682782 atgtttatagatttgatgaagataatgatgaaaaagaattttttttctgggttggtgtgttgttgatgatg 14682852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 18562977 - 18562923
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacc 280  Q
    ||||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||    
T  18562977 attataagtagctaaatctcttagagattaggtct-gagatgattctgatgtaacc 18562923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 11398516 - 11398438
Alignment:
Q  179 tatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  11398516 tatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 11398438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 9405927 - 9405959
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  9405927 attatgagtagctaaatctcttagagattaggt 9405959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 9865171 - 9865139
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  9865171 attatgagtagctaaatctcttagagattaggt 9865139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 17730484 - 17730516
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  17730484 attatgagtagctaaatctcttagagattaggt 17730516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 30474955 - 30474991
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaaaga 392  Q
    ||||||||||||||||| |||||||||||||||||||    
T  30474955 atgtttatagatttgataaagatgatgatgaaaaaga 30474991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 387
Target Start/End: Complemental strand, 30474545 - 30474514
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaa 387  Q
    ||||||||||||||||||||||||||||||||    
T  30474545 atgtttatagatttgatgaagatgatgatgaa 30474514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 13842262 - 13842355
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatct 271  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||| |||||||||||| ||||||||||||| | |||||||||||    
T  13842262 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgcgtagctaaatctattagagattaggtct-gagatgaatct 13842355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 14682161 - 14682127
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaaa 390  Q
    ||||||||||||||||||||||| |||||||||||    
T  14682161 atgtttatagatttgatgaagataatgatgaaaaa 14682127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 16956194 - 16956160
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaaa 390  Q
    ||||||||||||||||||||||| |||||||||||    
T  16956194 atgtttatagatttgatgaagataatgatgaaaaa 16956160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 16165418 - 16165462
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatc 270  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||    
T  16165418 attatgagtagttaaatctcttagagattaggtct-gagatgaatc 16165462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 25443267 - 25443234
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaa 389  Q
    ||||||||||||||||||||||| ||||||||||    
T  25443267 atgtttatagatttgatgaagattatgatgaaaa 25443234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 48645144 - 48645188
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatc 270  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||    
T  48645144 attatgcgtagctaaatctcttagagattaggtct-gagatgaatc 48645188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 4596453 - 4596421
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||| ||||||||||||||||||||||||||    
T  4596453 attatgtgtagctaaatctcttagagattaggt 4596421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 4695194 - 4695226
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||||||| |||||||||||||    
T  4695194 attatgagtagctaaatcttttagagattaggt 4695226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 17238427 - 17238459
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaa 388  Q
    ||||||||||||||| |||||||||||||||||    
T  17238427 atgtttatagatttgctgaagatgatgatgaaa 17238459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 23225350 - 23225318
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| |||||||||||||||||||||    
T  23225350 attatgagtagttaaatctcttagagattaggt 23225318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 23234503 - 23234471
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| |||||||||||||||||||||    
T  23234503 attatgagtagttaaatctcttagagattaggt 23234471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 358
Target Start/End: Original strand, 9575 - 9753
Alignment:
Q  180 atgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaac 279  Q
    |||||| | ||||| |||||||| |||||| |||||||||     ||||||||||||||||||||||||| ||||||| || |||||| ||||||||| |    
T  9575 atgtatattttaattctttaattgattatgctatttgtaaactcaattatgagtagctaaatctcttagatattaggtctg-agatgattctgatgtatc 9673  T
Q  280 c-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 358  Q
    | |  || ||| || | ||| |||||||||||| ||||||||||| ||| ||||||||||||||||||| ||| ||||||    
T  9674 cctaatttaaacatgttgctgtgaaactctatttcttatgaatatcaatatagttttattcaattcaattgttcttaatg 9753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 89404 - 89484
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| ||| |||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  89404 tttatgtatgttttaattcttcaattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 89484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 257
Target Start/End: Complemental strand, 7944439 - 7944352
Alignment:
Q  170 tagtcaatttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    |||||| ||||||| ||| ||||||||| |||| || |||||||||||||| |  ||||||||||| ||||||| ||||| |||||||    
T  7944439 tagtcagtttatgtctgttttaatgcttcaattgatcatgttatttgtaataccaattatgagtagttaaatctattagaaattaggt 7944352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 36711143 - 36711063
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  36711143 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 36711063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 22174363 - 22174319
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatc 270  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||    
T  22174363 attatgagtagctaaatctcttagagattaggtct-gagatgaatc 22174319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 12582688 - 12582720
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  12582688 attatgagtagctaaatctcttagagattaggt 12582720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 16953456 - 16953488
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  16953456 attatgagtagctaaatctcttagagattaggt 16953488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 18824834 - 18824802
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  18824834 attatgagtagctaaatctcttagagattaggt 18824802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 18826327 - 18826295
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  18826327 attatgagtagctaaatctcttagagattaggt 18826295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 2560248 - 2560301
Alignment:
Q  204 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||||     |||||||||||||||||||||||||| ||||||    
T  2560248 attatgttatttgtaaacaccattatgagtagctaaatctcttagaggttaggt 2560301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 5614167 - 5614135
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||| |||||||||||||||||||||||||||    
T  5614167 attataagtagctaaatctcttagagattaggt 5614135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 5980752 - 5980720
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||| ||||||||    
T  5980752 attatgagtagctaaatctcttagggattaggt 5980720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 30784610 - 30784642
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||| ||||||    
T  30784610 attatgagtagctaaatctcttagaggttaggt 30784642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 38248839 - 38248811
Alignment:
Q  225 attatgagtagctaaatctcttagagatt 253  Q
    |||||||||||||||||||||||||||||    
T  38248839 attatgagtagctaaatctcttagagatt 38248811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 118931 - 118854
Alignment:
Q  180 atgtatgtgttaatgctttaattaattatgttatttgtaat-tcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||  ||| ||| |||||| |||||||||  ||| |||||||||||||||||||||||||||||||||    
T  118931 atgtatgtgttaattatttcattgattatgctatttgtaaactcg-attatgagtagctaaatctcttagagattaggt 118854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 361
Target Start/End: Complemental strand, 34018220 - 34018085
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacctgtttgaaatatatggctatgaaactctattgcttatgaatatt 324  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||  ||||||||  |||||  || | ||| ||||||||||||  || |||||       
T  34018220 attatgagtagctaaatctcttagagattaggtct-gagatgattct-ttgtaacctaattgaaccatgttgctgtgaaactctatttattgtgaatgac 34018123  T
Q  325 aatctag-ttttattcaattcaatagtttttaatgttt 361  Q
    | ||||| |||||||||||||||| ||| |||||||||    
T  34018122 agtctagtttttattcaattcaattgttcttaatgttt 34018085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 15405572 - 15405492
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  15405572 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 15405492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 56195161 - 56195241
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  56195161 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 56195241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 361
Target Start/End: Complemental strand, 27691583 - 27691447
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 323  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||  ||||| |||  |||||  || | ||| ||||||||||||  || |||||      
T  27691583 attatgagtagctaaatctcttagagattaggtct-gagatgattct-ttgtaaccctaattgaatcatgttgctgtgaaactctatttattgtgaatga 27691486  T
Q  324 taatctag-ttttattcaattcaatagtttttaatgttt 361  Q
     ||||||| |||||||||||||||| ||| |||||||||    
T  27691485 caatctagtttttattcaattcaattgttcttaatgttt 27691447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 37740126 - 37740069
Alignment:
Q  300 tgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 358  Q
    ||||||||||||  || ||||||||||||||||||||||||||||||| ||| ||||||    
T  37740126 tgaaactctatta-ttgtgaatattaatctagttttattcaattcaattgttgttaatg 37740069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 15436930 - 15436877
Alignment:
Q  204 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    |||||| |||||||||   | |||||||||||||||||||||||||||||||||    
T  15436930 attatgctatttgtaaactgaattatgagtagctaaatctcttagagattaggt 15436877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 33494059 - 33493998
Alignment:
Q  300 tgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatgttt 361  Q
    |||||||||||| | ||||||||| ||| |||||||||| |||||||| ||| |||||||||    
T  33494059 tgaaactctatttcatatgaatatcaatttagttttatttaattcaattgttgttaatgttt 33493998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 33926601 - 33926693
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatc 270  Q
    ||||||||||| ||||| |||| ||| |||||  |||||||||     |||||||||| |||||||||||||||||||||| | ||||||||||    
T  33926601 tttatgtatgttttaattctttcattgattatactatttgtaaactcaattatgagtaactaaatctcttagagattaggtct-gagatgaatc 33926693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 34320357 - 34320313
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatc 270  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||    
T  34320357 attatgagtagctaaatctcttagagattaggtct-gagatgaatc 34320313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 44183609 - 44183642
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaa 389  Q
    ||||||||||||||||||||||||||||||||||    
T  44183609 atgtttatagatttgatgaagatgatgatgaaaa 44183642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 44809395 - 44809351
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttggagatgaatc 270  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||    
T  44809395 attatgagtagctaaatctcttagagattaggtct-gagatgaatc 44809351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 46955966 - 46955874
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatc 270  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     ||||||||||||||||||||||| ||||||||| | ||||||||||    
T  46955966 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttaaagattaggtct-gagatgaatc 46955874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 389
Target Start/End: Original strand, 50282721 - 50282754
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaa 389  Q
    ||||||||||||||||||||||||||||||||||    
T  50282721 atgtttatagatttgatgaagatgatgatgaaaa 50282754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 15163874 - 15163906
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  15163874 attatgagtagctaaatctcttagagattaggt 15163906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 15430316 - 15430264
Alignment:
Q  204 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattagg 256  Q
    |||||| |||||||||   | ||||||||||||||||||||||||||||||||    
T  15430316 attatgctatttgtaaactgaattatgagtagctaaatctcttagagattagg 15430264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 19820410 - 19820442
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  19820410 attatgagtagctaaatctcttagagattaggt 19820442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 19827172 - 19827204
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  19827172 attatgagtagctaaatctcttagagattaggt 19827204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 24150354 - 24150386
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  24150354 attatgagtagctaaatctcttagagattaggt 24150386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 27677494 - 27677462
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  27677494 attatgagtagctaaatctcttagagattaggt 27677462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 29324507 - 29324539
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  29324507 attatgagtagctaaatctcttagagattaggt 29324539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 38283928 - 38283896
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  38283928 attatgagtagctaaatctcttagagattaggt 38283896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 39501330 - 39501362
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  39501330 attatgagtagctaaatctcttagagattaggt 39501362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 40903523 - 40903491
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  40903523 attatgagtagctaaatctcttagagattaggt 40903491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 44164465 - 44164497
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  44164465 attatgagtagctaaatctcttagagattaggt 44164497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 45044640 - 45044604
Alignment:
Q  356 atgtttatagatttgatgaagatgatgatgaaaaaga 392  Q
    ||||||||| |||||||||||||||||||||||||||    
T  45044640 atgtttatatatttgatgaagatgatgatgaaaaaga 45044604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 48637187 - 48637219
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  48637187 attatgagtagctaaatctcttagagattaggt 48637219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 52006970 - 52006938
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  52006970 attatgagtagctaaatctcttagagattaggt 52006938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 52531375 - 52531343
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  52531375 attatgagtagctaaatctcttagagattaggt 52531343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 53094189 - 53094221
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  53094189 attatgagtagctaaatctcttagagattaggt 53094221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 257
Target Start/End: Complemental strand, 8877940 - 8877909
Alignment:
Q  226 ttatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||||||||||||||||||||    
T  8877940 ttatgagtagctaaatctcttagagattaggt 8877909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 48415967 - 48415937
Alignment:
Q  227 tatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||    
T  48415967 tatgagtagctaaatctcttagagattaggt 48415937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 56198535 - 56198565
Alignment:
Q  225 attatgagtagctaaatctcttagagattag 255  Q
    |||||||||||||||||||||||||||||||    
T  56198535 attatgagtagctaaatctcttagagattag 56198565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 8449027 - 8448950
Alignment:
Q  180 atgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    |||||||| |||||  ||| ||| |||||| |||||||||     |||||||||| ||||||||||||||||||||||    
T  8449027 atgtatgttttaattatttcatttattatgctatttgtaaactcaattatgagtaactaaatctcttagagattaggt 8448950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 48014508 - 48014459
Alignment:
Q  204 attatgttatttgtaattcgtattatgagtagctaaatctcttagagatt 253  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||    
T  48014508 attatgttatttgtaaactcaattatgagtagctaaatctcttagagatt 48014459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 12782587 - 12782619
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||| ||||||    
T  12782587 attatgagtagctaaatctcttagaggttaggt 12782619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1684 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 128 - 48
Alignment:
Q  177 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  128 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 48  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 260
Target Start/End: Original strand, 19078 - 19113
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggtttg 260  Q
    ||||||||||||||||||||||||||||||||||||    
T  19078 attatgagtagctaaatctcttagagattaggtttg 19113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 5035 - 5067
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  5035 attatgagtagctaaatctcttagagattaggt 5067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 4228 - 4196
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  4228 attatgagtagctaaatctcttagagattaggt 4196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 84923 - 84955
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||||||    
T  84923 attatgagtagctaaatctcttagagattaggt 84955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 4415 - 4387
Alignment:
Q  229 tgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||    
T  4415 tgagtagctaaatctcttagagattaggt 4387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 8654 - 8626
Alignment:
Q  229 tgagtagctaaatctcttagagattaggt 257  Q
    |||||||||||||||||||||||||||||    
T  8654 tgagtagctaaatctcttagagattaggt 8626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 114 - 82
Alignment:
Q  225 attatgagtagctaaatctcttagagattaggt 257  Q
    ||||||||||||||||||||||||| |||||||    
T  114 attatgagtagctaaatctcttagaaattaggt 82  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University