View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_19 (Length: 403)
Name: NF1913_low_19
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 55232690 - 55233058
Alignment:
| Q |
16 |
atattagaaagctgattaaaaaca-gtctcaaactccacaggatgaatgccttataaattaaaaatgaaaatgacccaataaagacattatttgaacaca |
114 |
Q |
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| T |
55232690 |
atattagaaagctgattaaaaacaagtctcaaactccacaggatgaatgccttataaataaaaaatgaaaaggacccaataaagacataatttgaacaca |
55232789 |
T |
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| Q |
115 |
ccttcatgtaggcagcaacatgtcccccaaagatgtacttccggtgaacctcagcatcaagctcttttttctccttgtcaaaaccagcaaaccttttgtc |
214 |
Q |
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| T |
55232790 |
ccttcatgtaggcagcaacatgtcccccaaagatgtacttccggtgaacctcagcatcaagctcttttttctccttgtcaaaaccagcaaaccttttgtc |
55232889 |
T |
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| Q |
215 |
gctgtgaggaatatccaaacccccatccaaagctccctgcagccaaacaaacccaattaataaatatcaatgtcacaagaatacaggacataggtaggtt |
314 |
Q |
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| T |
55232890 |
gctgtgaggaatatccaaacccccatccaaagctccctgcagccaaacaaacccaattaataaatatcaatgtcacaagaatacaggacataggtaggtt |
55232989 |
T |
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| Q |
315 |
attcatattagcatgaaataccttgagtgcaccaaagacgcggtttccggttgtggtcttaactagacc |
383 |
Q |
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| T |
55232990 |
attcatattagcatgaaataccttgagtgcaccaaagacgcggtttccggttgtggtcttaacgagacc |
55233058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 10464082 - 10464203
Alignment:
| Q |
114 |
accttcatgtaggcagcaacatgtcccccaaagatgtacttccggtgaacctcagcatcaagctcttttttctccttgtcaaaaccagcaaaccttttgt |
213 |
Q |
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| T |
10464082 |
accttcatgtaggcagaaacatgtcccccaaaaatatacttgcggtgaacctcagcatcgagctctttcttctccttgtcaaacccagcaaaccttttgt |
10464181 |
T |
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| Q |
214 |
cgctgtgaggaatatccaaacc |
235 |
Q |
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| T |
10464182 |
cactgtgaggaatatccaaacc |
10464203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 13923220 - 13923124
Alignment:
| Q |
115 |
ccttcatgtaggcagcaacatgtcccccaaagatgtacttccggtgaacctcagcatcaagctcttttttctccttgtcaaaaccagcaaacctttt |
211 |
Q |
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||||||| ||| |||||||||||| || ||||| | || ||| || ||||||||||||||| ||| ||||||||||| |||||| |||||||||| |
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| T |
13923220 |
ccttcatatagtaagcaacatgtccaccgaagatatttttacggcgagcctcagcatcaagctttttcttctccttgtcgaaaccaacaaacctttt |
13923124 |
T |
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