View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1913_low_2 (Length: 661)
Name: NF1913_low_2
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 15 - 352
Target Start/End: Complemental strand, 7109919 - 7109577
Alignment:
| Q |
15 |
ggagggaggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttaaatttnnnnnnntggagatcgaacagtttataaatgagac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||| |
|
|
| T |
7109919 |
ggagggaggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggctttagatttaaaaaaatggagattgaacagtttataaacgagac |
7109820 |
T |
|
| Q |
115 |
gacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcct-----tgat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7109819 |
gacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaatatggatgatcctatggttgat |
7109720 |
T |
|
| Q |
210 |
tttgttgattggaaggaggctaatcaacttatccatcttcctactagaggctctttttacacatggtcgaatagaaggggtggaaatgtttaatacatat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7109719 |
tttgttgattggaaggaggctaatcaacttatccatcttcctaccaaaggctctttttacacatggtcgaatagaaggggtggaaatgtttaatacatat |
7109620 |
T |
|
| Q |
310 |
aatataaatgactcgatagagccatttgcaatcaacaatggct |
352 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
7109619 |
aatataagtgacttgacagagccatttgcaatcaacaatggct |
7109577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 354 - 639
Target Start/End: Complemental strand, 7109285 - 7109000
Alignment:
| Q |
354 |
atttcttccaaacttattggaacaatgtgaataatgatgtaactaatgcggttttaaatttctttgtagatgactggatgctccctaactacaatgccaa |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7109285 |
atttcttccaaacttattggaacaatgtgaatactgatgtaactaatgcggttttaaatttctttgtagatgattggatgctccctaactacaatgccaa |
7109186 |
T |
|
| Q |
454 |
tgttattattcccatacctaagtttcaaggtgttgactgtgtggagcaatataggcctatagctttagataacttcaagtttaaaattataaccaaagtg |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7109185 |
tgttattattcccatacctaagtttcaaggtattgactgtgtggagcaatatagacctatagctttagataacttcaagtttaaaattataaccaaagtg |
7109086 |
T |
|
| Q |
554 |
attgctgaaaggttagctagaatcatgcctaacctcatttctaatcatcaaagaggatttattcaacaaagacaaatcaaagagtg |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
7109085 |
attgctgaaaggttagctagaatcatgcctaacctcatttctaagcagcaaagagaatttattcaacacagacaaatcaaagagtg |
7109000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 7110772 - 7110878
Alignment:
| Q |
87 |
tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttga |
186 |
Q |
| |
|
||||| || |||| |||||||| ||| ||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
7110772 |
tggaggtcaaacaatttataaacgaggcgacttataaatagattacattaagattttgagttaaattgtgatgtttctcttacatgtgtggttgcttcga |
7110871 |
T |
|
| Q |
187 |
accaaat |
193 |
Q |
| |
|
||||||| |
|
|
| T |
7110872 |
accaaat |
7110878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 95 - 205
Target Start/End: Complemental strand, 9987749 - 9987640
Alignment:
| Q |
95 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaaccaaata |
194 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
9987749 |
gaacaatttataaacaagacgagttataaacacattacattaaggttttgggttaact-gtgatgtctctcttacatgtgtgattgctttgaagcaaatg |
9987651 |
T |
|
| Q |
195 |
tggatgatcct |
205 |
Q |
| |
|
|||| |||||| |
|
|
| T |
9987650 |
tggacgatcct |
9987640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 9986561 - 9986483
Alignment:
| Q |
87 |
tggagatcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctc |
165 |
Q |
| |
|
||||| || |||| ||||||||||| |||||||||||||||||||||||| |||||| | |||||| ||||||||||| |
|
|
| T |
9986561 |
tggaggtcaaacaatttataaatgatgcgacttataaacacattacattaaagttttgggataaattatgatgtctctc |
9986483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 9992790 - 9992710
Alignment:
| Q |
93 |
tcgaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgt |
175 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||| ||| |||| || | |||||||||| |||||||||| |
|
|
| T |
9992790 |
tcgaacaatttataaacaagacgacttataaacacattacattaagg-tttaagtt-aactatgatgtctcttttacatgtgt |
9992710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 9991811 - 9991728
Alignment:
| Q |
104 |
ataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgctttgaa |
187 |
Q |
| |
|
||||| ||||||| || ||| || |||||||||| |||||| ||||||||||||||| || |||| |||||||||||||||| |
|
|
| T |
9991811 |
ataaacgagacgatttctaagcatattacattaaagttttgggttaaattgtgatgtatcccttagtggtgtggttgctttgaa |
9991728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 26169914 - 26169962
Alignment:
| Q |
22 |
ggggattaggccaaaaacccctcaaaaaggaacaaatttaaagttaggc |
70 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
26169914 |
ggggattaggccaaaaccccctcaaaaaggaacaaatctgaagttaggc |
26169962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 29873648 - 29873561
Alignment:
| Q |
95 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
182 |
Q |
| |
|
||||| ||||||| || || |||| |||||| |||| | |||||||||||||| | | ||||| |||||||| || |||||||||||| |
|
|
| T |
29873648 |
gaacattttataagtgggaggactcataaactcattgccttaaggttttgagtaagagtgtgacgtctctctcacttgtgtggttgct |
29873561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 15841477 - 15841390
Alignment:
| Q |
95 |
gaacagtttataaatgagacgacttataaacacattacattaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
182 |
Q |
| |
|
||||| ||| ||| ||||| || | ||||||||||| | ||||||||||| || | | |||||||||||||| || |||||||||||| |
|
|
| T |
15841477 |
gaacactttgtaagtgagaggattcataaacacattgccttaaggttttgggtaagagtgtgatgtctctctcacttgtgtggttgct |
15841390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 16524451 - 16524499
Alignment:
| Q |
134 |
ttaaggttttgagttaaattgtgatgtctctcttacatgtgtggttgct |
182 |
Q |
| |
|
|||||||||||||| | | |||| |||||||||||| |||||||||||| |
|
|
| T |
16524451 |
ttaaggttttgagtaagagtgtggtgtctctcttacttgtgtggttgct |
16524499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University