View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_20 (Length: 382)
Name: NF1913_low_20
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 4 - 366
Target Start/End: Complemental strand, 43850775 - 43850410
Alignment:
| Q |
4 |
ggaggagcagagaatgtttgtagagtcacgtgctggaattaaccgatgtttccaatcaacctaatgatgtccaaagtttagataattagctttacttttg |
103 |
Q |
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| T |
43850775 |
ggagcagcaaagaatgtttgtagagtcacctgctggaattaaccgatgtttccaatcaacctaatgatgtccaaagtttagataattagctttacttttg |
43850676 |
T |
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| Q |
104 |
atttcttagagttgggaatccaacaaccatgattctaaataaaagtctctaagtggaactgaatgtttgttaagtccaacatcaattcttgacaccaaag |
203 |
Q |
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| T |
43850675 |
atttcttagagttgggaatccaacaaccatgattctaaataaaagtctctaagtggaactgaaggtttgataagtccaacatcaattcttgacaccaaag |
43850576 |
T |
|
| Q |
204 |
ctttaacctcatt---gaatccattctcaattaccaataggaacaaagattgttgctcaagggacaaagtagattaagaaaccatcggactcggtcttgt |
300 |
Q |
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| T |
43850575 |
ctttaacctcattggagaatccattctcaattaccaataggaacaaagattgttgctcaagggacaaagtagattaagaaaccatcggactcggtcttgt |
43850476 |
T |
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| Q |
301 |
cagtgttctaaaagatgaaacttttcatcaaaattttgaaaataaactaagcaagagtgaaaatcc |
366 |
Q |
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| T |
43850475 |
cggtgttctaaaagatgaaacttttcatcaaaattttgaaaataaactaagcaagagtgaaaatcc |
43850410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 144 - 354
Target Start/End: Original strand, 31875780 - 31875993
Alignment:
| Q |
144 |
aaaagtctctaagtggaactgaatgtttgttaagtccaacatcaattcttgacaccaaagctttaacctcattg---aatccattctcaattaccaatag |
240 |
Q |
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| T |
31875780 |
aaaaatctctcactggaactgaagctttgataagtccaacatcaactcttgacacaaaagcattaacctcatttgaaaatcctttctcaattaccaatag |
31875879 |
T |
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| Q |
241 |
gaacaaagattgttgctcaagggacaaagtagattaagaaaccatcggactcggtcttgtcagtgttctaaaagatgaaacttttcatcaaaattttgaa |
340 |
Q |
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| T |
31875880 |
caacaaagtttgtagcactagggacaaagtagcttcaaaaaccattggtcttggtcttattggtgttctaaaagatgaaccttctcatcaaaattctgat |
31875979 |
T |
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| Q |
341 |
aataaactaagcaa |
354 |
Q |
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| T |
31875980 |
cataaactaagcaa |
31875993 |
T |
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