View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_21 (Length: 382)
Name: NF1913_low_21
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_21 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 97 - 369
Target Start/End: Original strand, 40478857 - 40479129
Alignment:
| Q |
97 |
gatcatagtggaaatatgcaaaagcaattatatnnnnnnntggagtcttttattttctgttcaaggtaacaaaaaacgtagcacgaaggactactccact |
196 |
Q |
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| T |
40478857 |
gatcatagtggaaatatgcaaaagcaattatataaaaaaatggagtcttttattttctgtttaaggtaacaaaaaacgtagcacgaaggactactccact |
40478956 |
T |
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| Q |
197 |
aataagtactctcaaatctcaattatctgataatgaaggaaaagaaacaataattaactaaatgggcacgttttcaaacggtcgaacctaataattaaat |
296 |
Q |
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| T |
40478957 |
aataagtactctcaaatctcaattatctgataatgaaggaaaataaacaataattaactaaatgggcacgttttcaaacggtcgaacctaataattaaat |
40479056 |
T |
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| Q |
297 |
aagtttccagatgccaaatattctccatctaacttgattcagataacctaaaaaggatgaaaatattctagaa |
369 |
Q |
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| T |
40479057 |
aagtttccagatgccaaatattctccatctaacttgattcagataacctaaaatggatgaaaatattctagaa |
40479129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 11786247 - 11786197
Alignment:
| Q |
29 |
tgtacatgggttcaggtccctaatcctaccttttagtgtttttgtgccttat |
80 |
Q |
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| T |
11786247 |
tgtacatgggttcaggtccctaatcctgccttttagtg-ttttgtgccttat |
11786197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 45348715 - 45348778
Alignment:
| Q |
17 |
gtaatgattttgtgtacatgggttcaggtccctaatcctaccttttagtgtttttgtgccttat |
80 |
Q |
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| T |
45348715 |
gtaatgattttgtgtacatgggttcaggtccctaatcctgtcttttagtgtttttgtgccttat |
45348778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 45358194 - 45358257
Alignment:
| Q |
17 |
gtaatgattttgtgtacatgggttcaggtccctaatcctaccttttagtgtttttgtgccttat |
80 |
Q |
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| T |
45358194 |
gtaatgattttgtgtacatgggttcaggtccctaatcctgtcttttagtgtttttgtgccttat |
45358257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 45119296 - 45119233
Alignment:
| Q |
17 |
gtaatgattttgtgtacatgggttcaggtccctaatcctaccttttagtgtttttgtgccttat |
80 |
Q |
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| T |
45119296 |
gtaatgattttatgtacatgggttcaggtccctaatcctgccttttagtgtttttgtgccttat |
45119233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 41880718 - 41880666
Alignment:
| Q |
28 |
gtgtacatgggttcaggtccctaatcctaccttttagtgtttttgtgccttat |
80 |
Q |
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| T |
41880718 |
gtgtacatgggttcaggtccctaatcctgccttttagtgtttttgtgccttat |
41880666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 42343623 - 42343679
Alignment:
| Q |
24 |
ttttgtgtacatgggttcaggtccctaatcctaccttttagtgtttttgtgccttat |
80 |
Q |
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| T |
42343623 |
ttttgtgtacataggttcaggtccctaatcctgccttttagtgtttttgtgccttat |
42343679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 7357 - 7293
Alignment:
| Q |
17 |
gtaatgattttgtgtacatgggttcaggtccc-taatcctaccttttagtgtttttgtgccttat |
80 |
Q |
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| T |
7357 |
gtaatgatcttgtgtacatgggttcaggccccaaaatcctgacttttagtgtttttgtgccttat |
7293 |
T |
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