View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1913_low_22 (Length: 378)
Name: NF1913_low_22
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 51 - 343
Target Start/End: Complemental strand, 42095897 - 42095592
Alignment:
| Q |
51 |
caaatataatagtcgataaatagctctttagaaaacaagtata----acttgatctacttca---------------ttcttttttggaatccgactcag |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
42095897 |
caaatataatagtcgataaatagctctttagaaaacaagtatagagtacttgatctacttcaatttacagtgcttcattcttttttggaatccgagtcag |
42095798 |
T |
|
| Q |
132 |
ctccaatgatgcactttaatagccccgcgtgaaaccattgatttaattttgctacaatttggcaatgatttattctgctgcttaatactcctatttgcct |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42095797 |
ctccaatgatgcactttaatagccccgcgtgaaaccattgatttaattttgctacaatttggcaatgatttattctgctgcttaatactcctatttgcct |
42095698 |
T |
|
| Q |
232 |
tcaagtcgcatctttccctcttaaaaaatttccttttcatatgtatggtaataatgataatgataatgattataacattaaaacacagctgaaatcaata |
331 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42095697 |
tcaagttgcatctttccctcttaaaaaatttccttttcatatgtatggtaacaatgataa------tgattataacattaaaacacagctgaaatcaata |
42095604 |
T |
|
| Q |
332 |
gcatgatcatag |
343 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42095603 |
gcatgatcatag |
42095592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University