View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_25 (Length: 367)
Name: NF1913_low_25
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 3933543 - 3933883
Alignment:
| Q |
12 |
agagatcaagattagaagaaactcatataacttatctacaattgtttccttttcagaatatgtgagcaatacgaacatgtcaatcttaatgaagaatatc |
111 |
Q |
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| T |
3933543 |
agagatcaatattagaagaaactcatataacttatctacaattgtttcctttttgaaatatgtgagcaatacgaacatgtcaatcttaatgaagaatatc |
3933642 |
T |
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| Q |
112 |
tttgatgtcttgtatcatagtagcatatttgtgaaaccttcgagttgaaattggaaa-tattaattaatagaatattgaaaatctcttagagaagttata |
210 |
Q |
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| T |
3933643 |
tttgatgtcttgtatcatagtagcatatttgtgaaaccttcgagttgaaattgaaaaatattaattaatagaatattgaaaatctcttatagaagttata |
3933742 |
T |
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| Q |
211 |
tcttggtaatttggctgcttaaccaacattagcctctgatgaataacatgaagtttgggatggacgatattagaggatcctaaaagaagtctcgagaaat |
310 |
Q |
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| T |
3933743 |
tcttggtaatttggctgcttaactaactttagcctctgatgaataacatgaagtttgggatggacgatattagaggatcctaaaagaagtctcgagaaat |
3933842 |
T |
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| Q |
311 |
cagaaatccatgtcccagaatgatgacgaacaagaccatcg |
351 |
Q |
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| T |
3933843 |
cagaaatccatgtcccagaatgatgacgaagaagaccatcg |
3933883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 34117074 - 34117134
Alignment:
| Q |
91 |
tcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaacctt |
151 |
Q |
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| T |
34117074 |
tcaatcttggtgaagaagatctttgatgtctttgatcaaagtagcatatttgtgaaacctt |
34117134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 34144093 - 34144153
Alignment:
| Q |
91 |
tcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaacctt |
151 |
Q |
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| T |
34144093 |
tcaatcttggtgaagaagatctttgatgtctttgatcaaagtagcatatttgtgaaacctt |
34144153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 34156709 - 34156769
Alignment:
| Q |
91 |
tcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaacctt |
151 |
Q |
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| T |
34156709 |
tcaatcttggtgaagaagatctttgatgtctttgatcaaagtagcatatttgtgaaacctt |
34156769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 33256690 - 33256621
Alignment:
| Q |
83 |
cgaacatgtcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaaccttc |
152 |
Q |
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| T |
33256690 |
cgaacatgtcaatcttgatgaagaatgtctttgatgtcttggatcaaagtgaaatagttgtgaaaccttc |
33256621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 41479527 - 41479616
Alignment:
| Q |
74 |
tgagcaatacgaacatgtcaatcttaatgaagaatatctttgatgtcttgtatcatagtagcatatttgtgaaaccttcgagttgaaatt |
163 |
Q |
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| T |
41479527 |
tgagcaatgcgaacatgccaaccttgatgaataagatctttgatgtcgtgaattaaagtaacatatttgtgaaaccttagagttggaatt |
41479616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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