View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_27 (Length: 363)
Name: NF1913_low_27
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 14665711 - 14665356
Alignment:
| Q |
1 |
caaagtgaaataattaatcaaacaaatgcataacacaaaactatctttgtgcaagacca---tagtcacaaaattatgccatcatgttttactctcgttt |
97 |
Q |
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| T |
14665711 |
caaagtgaaataattaatcaaacaaatgcataacacaaaactatctttgtgcaagaccaccatagtcacaaaattatgccatcatgttttactctcgttt |
14665612 |
T |
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| Q |
98 |
cccccc-aacttattttatactcttgttactgtaatatgcattacatcaccatccacggcatgaaaaaggacttgtaaaaatttagggtcttgtaattgt |
196 |
Q |
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| T |
14665611 |
cccccccaacttattttatactcttgttactgtaatatgcattacatc--catccacggcatgaaaaaggacttgtaaaaatttagggtcttgtaattgt |
14665514 |
T |
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| Q |
197 |
ataatggaataagcttaataataataagtagcggtacatattattcgtccttttcgtccttacatatatgctaaggagctatgtgagtggtaaagtagga |
296 |
Q |
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| T |
14665513 |
ataatagaataagcttaataataataagtagcggtacatattattcgtccttttcgtccttacatatatgctaaggagctatgtgagtggtaaagtagga |
14665414 |
T |
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| Q |
297 |
ccatgcttaattgtccaaaaacaaatgccaccatattgcagaccagatctagtattat |
354 |
Q |
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| T |
14665413 |
ccatgcttaattgtccaaaaacaaatgccaccatattgcagaccaggtctagtgttat |
14665356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 276 - 330
Target Start/End: Complemental strand, 14664536 - 14664483
Alignment:
| Q |
276 |
tatgtgagtggtaaagtaggaccatgcttaattgtccaaaaacaaatgccaccat |
330 |
Q |
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| T |
14664536 |
tatgtgagtggtaaagtagggtcatgcttaattgtccaaaaac-aatgccaccat |
14664483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 14664716 - 14664635
Alignment:
| Q |
120 |
ttgttactgtaatatgcattacatcaccatccacggcatgaaaaa-ggacttgt-aaaaatttagggtcttgtaattgtata |
199 |
Q |
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| T |
14664716 |
ttgttactataatatgcattacatcaccatccacaacatgaaaaagggacttctaaaaaaatcagggtcttataattgtata |
14664635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 14664866 - 14664796
Alignment:
| Q |
5 |
gtgaaataattaatcaaacaaatgcataacacaaaactatctttgtgcaagaccatagtcacaaaattatg |
75 |
Q |
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| T |
14664866 |
gtgaaataattaattaatcatatacctaacacaaaactatctttgtgcaatatcatagccccaaaattatg |
14664796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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