View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_30 (Length: 353)
Name: NF1913_low_30
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 56 - 338
Target Start/End: Original strand, 3021046 - 3021328
Alignment:
| Q |
56 |
tactcagacacttcttcttcagaaacaagttcatcggaagtgattttggcatcagttaataagccaaagaagagaacagggagaagagtgtttaaggaga |
155 |
Q |
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| T |
3021046 |
tactcagacacttcttcttcagaaacaagttcctcggaagtgattttggcatcagttaataagccaaagaagagagcaggtagaagagtgttcaaggaga |
3021145 |
T |
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| Q |
156 |
caagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagttcctaatattaacgttaacaaaaacaataagtc |
255 |
Q |
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| T |
3021146 |
caagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatgagagttcctaacaatatcgttaacaaaaataataagtc |
3021245 |
T |
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| Q |
256 |
aaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttgctcttaagggaaaat |
338 |
Q |
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| T |
3021246 |
aaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaat |
3021328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 66 - 338
Target Start/End: Original strand, 3030273 - 3030542
Alignment:
| Q |
66 |
cttcttcttcagaaacaagttcatcggaagtgattttggcatcagttaataagccaaagaagagaacagggagaagagtgtttaaggagacaagacatcc |
165 |
Q |
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| T |
3030273 |
cttcttcttcagaaacaagttcttcagaagtgattttggcatctgc-aaga--ccaaagaagagagcagggagaagagtgtttaaggagacaagacatcc |
3030369 |
T |
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| Q |
166 |
agtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagttcctaatattaacgttaacaaaaacaataagtcaaggatttgg |
265 |
Q |
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| T |
3030370 |
agtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatgagagttcctaatattaacgttaacaaaaacaataagtcaaggatttgg |
3030469 |
T |
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| Q |
266 |
cttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttgctcttaagggaaaat |
338 |
Q |
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| T |
3030470 |
cttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaat |
3030542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 119 - 338
Target Start/End: Original strand, 3037978 - 3038197
Alignment:
| Q |
119 |
ccaaagaagagaacagggagaagagtgtttaaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaagtgggtttgtgagatga |
218 |
Q |
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| T |
3037978 |
ccaaagaagagagcaggtagaagagtgttcaaggagacaagacatccggtgtaccgaggagtacgacgtaggaagaataacaagtgggtttgtgagatga |
3038077 |
T |
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| Q |
219 |
gagttcctaatattaacgttaacaaaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgc |
318 |
Q |
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| T |
3038078 |
gagttcctaacaatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgc |
3038177 |
T |
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| Q |
319 |
acttgctcttaagggaaaat |
338 |
Q |
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|||| ||||||| ||||||| |
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| T |
3038178 |
acttactcttaaaggaaaat |
3038197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 3020976 - 3021022
Alignment:
| Q |
10 |
ataatactcaattcaatcacataagcaacttattcaaataatggatt |
56 |
Q |
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| T |
3020976 |
ataatattcaattcaatcacataagcaacttattcaaataatggatt |
3021022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 42553805 - 42553741
Alignment:
| Q |
257 |
aggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcact |
321 |
Q |
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| T |
42553805 |
aggatttggcttggaacatatccaacacctgagatggcagcacgtgcacacgacgttgccgcact |
42553741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 42553904 - 42553852
Alignment:
| Q |
149 |
aaggagacaagacatccagtgtaccgaggagtacgaagaaggaacaataacaa |
201 |
Q |
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| T |
42553904 |
aaggagacaagacatccagtatacagaggagtacgaagaaggaacaacaacaa |
42553852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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