View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1913_low_32 (Length: 347)
Name: NF1913_low_32
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 76 - 278
Target Start/End: Original strand, 39272347 - 39272547
Alignment:
| Q |
76 |
caacaatcaattatagactcaaagaaaggaataatcaaataccatgaaaactaaaaattattcaaaacacgagagtaaaatattgatgcattatttaggt |
175 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39272347 |
caacaatcaattataaactcaaagaaaggaataatcaaatacaatcaaaactaaaaattattcaaaacaagagagtaaaatattgatgcattatttaggt |
39272446 |
T |
|
| Q |
176 |
gaaatacattctctgagaggaatactactacatatgtttgaaattactaattactgtatattttgcatctgtataaataataacctccatttgaaggccc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272447 |
gaaatacattctctgagaggaatactactaaataagtttgaaatta--aattactgtatattttgcatctgtataaataataacctccatttgaaggccc |
39272544 |
T |
|
| Q |
276 |
tta |
278 |
Q |
| |
|
||| |
|
|
| T |
39272545 |
tta |
39272547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 39272575 - 39272637
Alignment:
| Q |
277 |
tagaggatctcattcaggcaagccccaaagacttgagtctagagaattcaatcctcctttgct |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39272575 |
tagaggatctcattcaggcaagccccaaagacttgagtctagagaattcaatcctcctatgct |
39272637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 39272260 - 39272325
Alignment:
| Q |
18 |
gctagctcatctccttctccaccccttgcctcttttccgtg--tatatatgaaccatactcaacaa |
81 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39272260 |
gctagttcatctccttctccgccccttgcctcttttccgtgtatatatatgaaccatactcaacaa |
39272325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 2623599 - 2623536
Alignment:
| Q |
19 |
ctagctcatctccttctccaccccttgcctcttttccgtgtatatatgaaccatactcaacaat |
82 |
Q |
| |
|
|||| ||| |||||||||||||||||||| ||||| | |||||||||| | |||||||||||| |
|
|
| T |
2623599 |
ctagttcaactccttctccaccccttgccccttttttgcgtatatatgagcaatactcaacaat |
2623536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University