View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1913_low_33 (Length: 340)

Name: NF1913_low_33
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1913_low_33
NF1913_low_33
[»] chr7 (3 HSPs)
chr7 (19-207)||(34719979-34720167)
chr7 (278-325)||(34720237-34720284)
chr7 (24-139)||(34715221-34715333)
[»] chr6 (3 HSPs)
chr6 (23-68)||(5185076-5185121)
chr6 (36-68)||(5358367-5358399)
chr6 (20-68)||(5422042-5422090)
[»] chr4 (6 HSPs)
chr4 (19-58)||(6625959-6625998)
chr4 (30-61)||(6793310-6793341)
chr4 (19-58)||(6833264-6833303)
chr4 (19-57)||(6667102-6667140)
chr4 (30-58)||(6716374-6716402)
chr4 (30-58)||(21227102-21227130)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 34719979 - 34720167
Alignment:
Q  19 ttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctttcctaaaatnnnnnnntaaagcaaattagcaaagcttgcgtactagctaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| |||||||||||    
T  34719979 ttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctttcctaaaataaaaaaataaagcaaattagcaaagcttgtgtactagctaa 34720078  T
Q  119 atacctggtatgctattaacatcaaccatctgttttgaaacttgtagttactttgatatttaatttttattcacaacctaacaaacttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34720079 atacctggtatgctattaacatcaaccatctgttttgaaacttgtacttactttgatatttaatttttattcacaacctaacaaacttc 34720167  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 34720237 - 34720284
Alignment:
Q  278 gtaagcctcaaaaaatcatatcttacctcagaaataccccttaaattt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34720237 gtaagcctcaaaaaatcatatcttacctcagaaataccccttaaattt 34720284  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 34715221 - 34715333
Alignment:
Q  24 cgagtatcttcccctctgaaactcaagaacacatcatagatcctttcctaaaatnnnnnnntaaagcaaattagcaaagcttgcgtactagctaaatacc 123  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||| ||          |||| |||||| ||||||||| ||| ||||||||||||    
T  34715221 cgagtatctttccctctgaaactcaagaacacatcatagaacctttcctgaa---gaaaaagaaagtaaattatcaaagcttgtgtagtagctaaatacc 34715317  T
Q  124 tggtatgctattaaca 139  Q
    | ||||||||| ||||    
T  34715318 tagtatgctatcaaca 34715333  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 5185076 - 5185121
Alignment:
Q  23 acgagtatcttcccctctgaaactcaagaacacatcatagatcctt 68  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||    
T  5185076 acgagtatcttcccctctaaaacttaagaacacatcatggatcctt 5185121  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 5358367 - 5358399
Alignment:
Q  36 cctctgaaactcaagaacacatcatagatcctt 68  Q
    ||||||||||||||||||||||||| |||||||    
T  5358367 cctctgaaactcaagaacacatcatggatcctt 5358399  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 5422090 - 5422042
Alignment:
Q  20 tgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctt 68  Q
    |||||||||||| || ||||| ||||| ||||||||||||| |||||||    
T  5422090 tgcacgagtatcctctcctctaaaacttaagaacacatcatggatcctt 5422042  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 6625959 - 6625998
Alignment:
Q  19 ttgcacgagtatcttcccctctgaaactcaagaacacatc 58  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  6625959 ttgcacgactgtcttcccctctgaaactcaagaacacatc 6625998  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 6793341 - 6793310
Alignment:
Q  30 tcttcccctctgaaactcaagaacacatcata 61  Q
    ||||||||||||||||||||||||||||||||    
T  6793341 tcttcccctctgaaactcaagaacacatcata 6793310  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 6833303 - 6833264
Alignment:
Q  19 ttgcacgagtatcttcccctctgaaactcaagaacacatc 58  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  6833303 ttgcacgactatcttcccctctgaaactcaagaatacatc 6833264  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 6667140 - 6667102
Alignment:
Q  19 ttgcacgagtatcttcccctctgaaactcaagaacacat 57  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  6667140 ttgcacgactttcttcccctctgaaactcaagaacacat 6667102  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 6716402 - 6716374
Alignment:
Q  30 tcttcccctctgaaactcaagaacacatc 58  Q
    |||||||||||||||||||||||||||||    
T  6716402 tcttcccctctgaaactcaagaacacatc 6716374  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 21227130 - 21227102
Alignment:
Q  30 tcttcccctctgaaactcaagaacacatc 58  Q
    |||||||||||||||||||||||||||||    
T  21227130 tcttcccctctgaaactcaagaacacatc 21227102  T

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