View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1913_low_36 (Length: 332)
Name: NF1913_low_36
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 29138129 - 29137828
Alignment:
| Q |
19 |
ggatccaccatcacaagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagcttcgcattcagcatact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29138129 |
ggatccaccatcacaagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagcttcgcattcagcatact |
29138030 |
T |
|
| Q |
119 |
ccacagcatcctgtaggttcacagtgaataatgtaaagaaacaattttgaatagattattggttatattaatcatcccaannnnnnnaatctgtccaaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
29138029 |
ccacagcatcctgtaggttcacagtgaataatgtaaataaacaattttgaatagattattggttatattaataatcccaa-ttttttaatctgtccaaac |
29137931 |
T |
|
| Q |
219 |
atgtgtttctttccaaatctattcaaattgattaatagtatatatttaccatgggaggctgaacatctggaacaactgtagaagtaatcactttgcccct |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29137930 |
atgtgtttctttccaaatccattcaaattgattaatagtatatatttaccatgggaggctgaacatctggaacaactgtagaagtaatcactttgcccct |
29137831 |
T |
|
| Q |
319 |
atg |
321 |
Q |
| |
|
||| |
|
|
| T |
29137830 |
atg |
29137828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 14296176 - 14296070
Alignment:
| Q |
25 |
accatcacaagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagcttcgcattcagcatactccacag |
124 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||| ||||||| || |||||||||||||| |||||||| ||||||||||| ||||| |||||||||| | |
|
|
| T |
14296176 |
accattacaagatccatatcctcaatccctctcctcttcatagcttctcgaaatggagggaagtccttcacaacagcttcacattcggcatactccatgg |
14296077 |
T |
|
| Q |
125 |
catcctg |
131 |
Q |
| |
|
||||||| |
|
|
| T |
14296076 |
catcctg |
14296070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 34612873 - 34612762
Alignment:
| Q |
19 |
ggatccaccatcacaagatccatatcttcaattcctcttttcttcattgcctctcgaaatggaggaaagtcctttacaacagcttcgcattcagcatact |
118 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| || ||||||||||| |||||| ||| || ||||| || |||||||| |||||||| ||||| | |
|
|
| T |
34612873 |
ggatcaaccattacaagatccatgtcttcaataccccttttcttcatagcctctataaaagggggaaaacttttaacaacagcctcgcattctgcatatt |
34612774 |
T |
|
| Q |
119 |
ccacagcatcct |
130 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
34612773 |
cctcagcatcct |
34612762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University