View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_37 (Length: 331)
Name: NF1913_low_37
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 1684149 - 1684446
Alignment:
| Q |
12 |
atcatcatctatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctgatctgtagt |
111 |
Q |
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| T |
1684149 |
atcatcatcaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctgatctgcagt |
1684248 |
T |
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| Q |
112 |
agtcagtgaaaatgtacattaattaattaatatgggttaagtataaatcattcatccaattattaactcacaagtcacaacaatactataggaatataaa |
211 |
Q |
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| T |
1684249 |
agtcagtgaaagtgta----tattaattaatatgggttaagtataaatcattcatccaattattaactcacaagtcacaacaatactataggaatataaa |
1684344 |
T |
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| Q |
212 |
ttaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagccagaatggcatgtattt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1684345 |
ttaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagccagaatggcatgtattt |
1684444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 1694570 - 1694881
Alignment:
| Q |
12 |
atcatcatctatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctgatctgtagt |
111 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | | |
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| T |
1694570 |
atcatcaccaatctgattatctcccctgcaccagtaatagccatatagtatgagctgaatagttccagagattactccaataccattactgatctgcaat |
1694669 |
T |
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| Q |
112 |
agtcagtgaaaatgtacattaattaattaatatgggttaagtataaatcattcatccaat---------------tattaactcacaagtcacaacaata |
196 |
Q |
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| T |
1694670 |
aatcagtaaaaatgtatattaat-----aacatgggttaagtataaatctttaatccaattgaattacatacaattattaactcacaaatcacaacaata |
1694764 |
T |
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| Q |
197 |
ctataggaatataaattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagcca |
296 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
1694765 |
ctataggaatataaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagtccattgaggaagttggtaagagagagcca |
1694864 |
T |
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| Q |
297 |
gaatggcatgtatttca |
313 |
Q |
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| T |
1694865 |
gaatggcatgtatttca |
1694881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 1970553 - 1970616
Alignment:
| Q |
11 |
catcatcatctatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagt |
74 |
Q |
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| T |
1970553 |
catcatcatcaatctgattttctcccttgcacgagtaataagcatataatatgagctgaacagt |
1970616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 1699904 - 1699973
Alignment:
| Q |
244 |
agagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagccagaatggcatgtatttca |
313 |
Q |
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| T |
1699904 |
agagcatatgttgtccagcacaaaccattgaggaagttggttagagagagccaaaatggcatgtatttca |
1699973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 1699287 - 1699335
Alignment:
| Q |
53 |
catatagtatgagctgaacagttccagagattactccaataccattgct |
101 |
Q |
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|||||||||||||||||||| ||||||| | ||||||||||||||||| |
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| T |
1699287 |
catatagtatgagctgaacaattccagaaaccactccaataccattgct |
1699335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 1673944 - 1674033
Alignment:
| Q |
14 |
catcatctatctgattatctcccctgcaccagtaatagccatatagtatgagctgaacagttccagagattactccaataccattgctga |
103 |
Q |
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||||||| ||| ||| |||||| ||||||| |||| |||||| ||||||||||||| || |||||| |||||||||||||||||| |
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| T |
1673944 |
catcatcattcttattttctcccttgcaccaaaaataaacatataatatgagctgaacaaaacctgagattgctccaataccattgctga |
1674033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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