View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_4 (Length: 548)
Name: NF1913_low_4
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 532
Target Start/End: Original strand, 13766330 - 13766851
Alignment:
| Q |
13 |
aatattaatatttt-ttgtctgggtgtgtattttcgaatgctatacgattttgggaggaaaacgttgggccaaaaaactagtgtggttattttttcatcc |
111 |
Q |
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| T |
13766330 |
aatattaatatttttttgtctgggtgtgtattttcgaatgctatacgattttgggaggaaaacgttgggccaaaaaactagtgtggttattttttcatcc |
13766429 |
T |
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| Q |
112 |
ggtcaaaagaaatggttaatttttcgtttttatgatttggaaaacggttaatacatgatgttaaaatctattattggttatgaaacgtaacatggaatca |
211 |
Q |
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| T |
13766430 |
ggtcaaaagaaatggttaatttttcgtttttatgatttggaaaacggttaatacatgatgttaaaatctattattggttatgaaacgtaacatggaatca |
13766529 |
T |
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| Q |
212 |
tcatcatcttctacccatttctcctgttcttcttccattttcctttcacattcttcacccaacactttgctcgttcaaactcatgacactttctggattt |
311 |
Q |
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| T |
13766530 |
tcatcttcttcttcccatttctcttgttcttcttccattttcctttcacattcttcacccaacactttgctcgttcaaactcatgacactttctggattt |
13766629 |
T |
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| Q |
312 |
cacgtgtatatatggtatgttcttttcctccttcaatttatttggtttaacatttctagccatgcaaatatttcattgtaacctaatttgaatttagggt |
411 |
Q |
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| T |
13766630 |
cacgtg----tatggtatgttcatttcctccttcaagttatttgatttaacatttctagccatgcaaatatttcattgtaacctaatttgaatttagggt |
13766725 |
T |
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| Q |
412 |
tcaatgtcatgtccaatgtaatct-----aatcaaatgaaacaaaaattgaaacctattatacatattatgttttaattaattaaggtattttgtcatct |
506 |
Q |
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| T |
13766726 |
tctatgtcatgtccaatgtaatctaatcaaatcaaatgaaacaaaaattgaaacctattatacatattatgttttaattaattaaggtattttgtcatct |
13766825 |
T |
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| Q |
507 |
atatgaacaaataaatacgtcacata |
532 |
Q |
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| T |
13766826 |
atatgaacaaataaatacgtcacata |
13766851 |
T |
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