View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1913_low_40 (Length: 326)
Name: NF1913_low_40
Description: NF1913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1913_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 109 - 309
Target Start/End: Complemental strand, 1855333 - 1855133
Alignment:
| Q |
109 |
cgtacagagacgtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtct |
208 |
Q |
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| T |
1855333 |
cgtacagagatgtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtct |
1855234 |
T |
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| Q |
209 |
gtacaattgagcataaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccac |
308 |
Q |
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| T |
1855233 |
gtacaagtgagcataaatttggaatttatgtaacatggtgtatgatcttgtgctgttgaatttcctatgccaaatggatatggaacttttacacctccac |
1855134 |
T |
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| Q |
309 |
a |
309 |
Q |
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| T |
1855133 |
a |
1855133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 1855435 - 1855362
Alignment:
| Q |
1 |
tgttatgaatttgttgtctgtgcttgaaattgcgagagaagaaactctgagagaaggtttatttgctttttcgg |
74 |
Q |
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| T |
1855435 |
tgttatgaatttgttgtctgtgcttgaaattgcgagggaagaaactctgagagaaggtttatttgctttttcgg |
1855362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 1844913 - 1844992
Alignment:
| Q |
236 |
atgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaacttttacacctccacaagtata |
315 |
Q |
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| T |
1844913 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaatgtttatatctccacaagtata |
1844992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 120 - 293
Target Start/End: Original strand, 1817866 - 1818039
Alignment:
| Q |
120 |
gtgagacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgag |
219 |
Q |
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| T |
1817866 |
gtgagactgaaaatttcatttccacttgaccttggggatttatgtccaggacttcgatacccctaggccgaattaattttgagttgtttacacaggtgag |
1817965 |
T |
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| Q |
220 |
cataaatttggaatttatgtaacatggtgtatgatcttgtgttgttgaatttcctatgccaaatggatatggaa |
293 |
Q |
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| T |
1817966 |
ttcaaattttgaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaa |
1818039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 37566845 - 37566744
Alignment:
| Q |
124 |
gacgaaaaatctcatttccatttgaccttggggatttatgtctaggacttgtatattcttaccataaattaatttggaattgtctgtacaattgagcata |
223 |
Q |
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| T |
37566845 |
gacgaaaaatttcatttccatttgaccgtgcggatttatgtctaggacttgtagattcttaccacggattaatttggagttgtttgtacaagtgagctta |
37566746 |
T |
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| Q |
224 |
aa |
225 |
Q |
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|| |
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| T |
37566745 |
aa |
37566744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 37566902 - 37566852
Alignment:
| Q |
2 |
gttatgaatttgttgtctgtgcttgaaattgcgagagaagaaactctgaga |
52 |
Q |
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| T |
37566902 |
gttatgaatttgttttccgtgcttgaaattgtgagagaaggaactctgaga |
37566852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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